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Search of human proteins with 93141024
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|93141024 chemokine-like factor isoform e [Homo sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|93141024 chemokine-like factor isoform e [Homo sapiens] 225 7e-60
gi|8393581 chemokine-like factor isoform a [Homo sapiens] 224 1e-59
gi|32307156 chemokine-like factor isoform d [Homo sapiens] 165 6e-42
gi|32307154 chemokine-like factor isoform b [Homo sapiens] 96 8e-21
gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Hom... 94 3e-20
gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Hom... 92 7e-20
gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo ... 81 2e-16
gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo ... 80 3e-16
gi|7705933 chemokine-like factor isoform c [Homo sapiens] 60 4e-10
gi|19923929 CKLF-like MARVEL transmembrane domain containing 7 i... 45 1e-05
gi|21389567 chemokine-like factor superfamily 2 [Homo sapiens] 42 1e-04
gi|115385972 chemokine-like factor superfamily 3 [Homo sapiens] 37 0.003
gi|32130528 chemokine-like factor superfamily 3 [Homo sapiens] 37 0.003
gi|32130526 chemokine-like factor superfamily 3 [Homo sapiens] 37 0.003
gi|21389401 chemokine-like factor superfamily 3 [Homo sapiens] 37 0.003
gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo ... 35 0.010
gi|27886667 potassium voltage-gated channel, subfamily H, member... 32 0.14
gi|31657099 CKLF-like MARVEL transmembrane domain containing 7 i... 31 0.19
gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo ... 30 0.32
gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo ... 30 0.32
gi|31563398 chemokine-like factor superfamily 1 isoform 4 [Homo ... 30 0.54
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 30 0.54
gi|6912446 potassium voltage-gated channel, subfamily H, member ... 29 0.92
gi|210031196 transmembrane protein with metallophosphoesterase d... 29 0.92
gi|31563396 chemokine-like factor superfamily 1 isoform 3 [Homo ... 28 1.2
gi|31563402 chemokine-like factor superfamily 1 isoform 5 [Homo ... 28 1.2
gi|42558283 gap junction protein beta 2 [Homo sapiens] 28 2.0
gi|9966787 solute carrier family 24 (sodium/potassium/calcium ex... 28 2.0
gi|22296884 transmembrane protein 185A [Homo sapiens] 27 3.5
gi|42542383 solute carrier family 28, member 1 isoform 2 [Homo s... 27 4.6
>gi|93141024 chemokine-like factor isoform e [Homo sapiens]
Length = 113
Score = 225 bits (573), Expect = 7e-60
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI 60
MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
Sbjct: 1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI 60
Query: 61 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGLF 113
LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGLF
Sbjct: 61 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGLF 113
>gi|8393581 chemokine-like factor isoform a [Homo sapiens]
Length = 152
Score = 224 bits (570), Expect = 1e-59
Identities = 112/113 (99%), Positives = 113/113 (100%)
Query: 1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI 60
MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
Sbjct: 1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI 60
Query: 61 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGLF 113
LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGG+F
Sbjct: 61 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVF 113
>gi|32307156 chemokine-like factor isoform d [Homo sapiens]
Length = 120
Score = 165 bits (418), Expect = 6e-42
Identities = 84/92 (91%), Positives = 86/92 (93%), Gaps = 2/92 (2%)
Query: 1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI 60
MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
Sbjct: 1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI 60
Query: 61 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFML 92
LLYVLRLDRLMKWLFWPLL + +LVT V L
Sbjct: 61 LLYVLRLDRLMKWLFWPLL--VFALVTAVCCL 90
>gi|32307154 chemokine-like factor isoform b [Homo sapiens]
Length = 99
Score = 95.5 bits (236), Expect = 8e-21
Identities = 59/113 (52%), Positives = 60/113 (53%), Gaps = 53/113 (46%)
Query: 1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI 60
MDNVQPKIKHRPFCFSVKGHVKMLR
Sbjct: 1 MDNVQPKIKHRPFCFSVKGHVKMLR----------------------------------- 25
Query: 61 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGLF 113
LDIINSLVTTVFMLIVSVLALIPETTTLTVGGG+F
Sbjct: 26 ------------------LDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVF 60
>gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Homo
sapiens]
Length = 286
Score = 93.6 bits (231), Expect = 3e-20
Identities = 47/102 (46%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Query: 13 FCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRLMK 72
F FS G +K+LRL+L + ++ FII QA E +I IT E+ +++FFIL+YVL L L+
Sbjct: 131 FSFSPTGMLKILRLSLILGALACFIITQANESFITITSLEICIVVFFILIYVLTLHHLLT 190
Query: 73 WLFWPLLDIINSLVTTVFMLIVSVLALIPETT--TLTVGGGL 112
+L WPLLD+ NS++T VF+ +V++LA+ + L VGG L
Sbjct: 191 YLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSL 232
>gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Homo
sapiens]
Length = 231
Score = 92.4 bits (228), Expect = 7e-20
Identities = 42/87 (48%), Positives = 64/87 (73%)
Query: 13 FCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRLMK 72
F FS G +K+LRL+L + ++ FII QA E +I IT E+ +++FFIL+YVL L L+
Sbjct: 131 FSFSPTGMLKILRLSLILGALACFIITQANESFITITSLEICIVVFFILIYVLTLHHLLT 190
Query: 73 WLFWPLLDIINSLVTTVFMLIVSVLAL 99
+L WPLLD+ NS++T VF+ +V++LA+
Sbjct: 191 YLHWPLLDLTNSIITAVFLSVVAILAM 217
>gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo
sapiens]
Length = 169
Score = 81.3 bits (199), Expect = 2e-16
Identities = 40/89 (44%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Query: 26 LALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSL 85
L+L + ++ FII QA E +I IT E+ +++FFIL+YVL L L+ +L WPLLD+ NS+
Sbjct: 27 LSLILGALACFIITQANESFITITSLEICIVVFFILIYVLTLHHLLTYLHWPLLDLTNSI 86
Query: 86 VTTVFMLIVSVLALIPETT--TLTVGGGL 112
+T VF+ +V++LA+ + L VGG L
Sbjct: 87 ITAVFLSVVAILAMQEKKRRHLLYVGGSL 115
>gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo
sapiens]
Length = 114
Score = 80.1 bits (196), Expect = 3e-16
Identities = 35/74 (47%), Positives = 55/74 (74%)
Query: 26 LALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSL 85
L+L + ++ FII QA E +I IT E+ +++FFIL+YVL L L+ +L WPLLD+ NS+
Sbjct: 27 LSLILGALACFIITQANESFITITSLEICIVVFFILIYVLTLHHLLTYLHWPLLDLTNSI 86
Query: 86 VTTVFMLIVSVLAL 99
+T VF+ +V++LA+
Sbjct: 87 ITAVFLSVVAILAM 100
>gi|7705933 chemokine-like factor isoform c [Homo sapiens]
Length = 67
Score = 60.1 bits (144), Expect = 4e-10
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTS 32
MDNVQPKIKHRPFCFSVKGHVKMLRL + +
Sbjct: 1 MDNVQPKIKHRPFCFSVKGHVKMLRLVFALVT 32
>gi|19923929 CKLF-like MARVEL transmembrane domain containing 7
isoform a [Homo sapiens]
Length = 175
Score = 45.1 bits (105), Expect = 1e-05
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 20 HVKMLRLALTVTSMTFFIIAQ--------APEPYIVITGFEVTVILFFILLYVLRLDRLM 71
H +L++A VT + FI + A + V+T ++ +IL F L+++ R R++
Sbjct: 44 HAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVL 103
Query: 72 KWLFWPLLDIINSLVTTVFMLIVSVLA 98
+ WPL ++++ L+ T+ +LI S++A
Sbjct: 104 TCISWPLSELLHYLIGTLLLLIASIVA 130
>gi|21389567 chemokine-like factor superfamily 2 [Homo sapiens]
Length = 248
Score = 42.0 bits (97), Expect = 1e-04
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 15 FSVKGH--VKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRLMK 72
F + GH +K+ L + +M +I E++ FFILLY + R +
Sbjct: 82 FWLLGHAEIKIRSLGCLIAAMILLSSLTVHPILRLIITMEISFFSFFILLYSFAIHRYIP 141
Query: 73 WLFWPLLDIINSLVTTVFMLIVSVLAL 99
++ WP+ D+ N L+ F++ V A+
Sbjct: 142 FILWPISDLFNDLIACAFLVGAVVFAV 168
>gi|115385972 chemokine-like factor superfamily 3 [Homo sapiens]
Length = 182
Score = 37.4 bits (85), Expect = 0.003
Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 11 RPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRL 70
R F S+KG + + L+ + ++ + A ++ E + L+F+ ++L+
Sbjct: 34 RAFLCSLKGRLLLAESGLSFITFICYVASSA-SAFLTAPLLEFLLALYFLFADAMQLNDK 92
Query: 71 MKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGLF 113
+ L WP++D + + + +S+ A+ + + G+F
Sbjct: 93 WQGLCWPMMDFLRCVTAALIYFAISITAIAKYSDGASKAAGVF 135
>gi|32130528 chemokine-like factor superfamily 3 [Homo sapiens]
Length = 182
Score = 37.4 bits (85), Expect = 0.003
Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 11 RPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRL 70
R F S+KG + + L+ + ++ + A ++ E + L+F+ ++L+
Sbjct: 34 RAFLCSLKGRLLLAESGLSFITFICYVASSA-SAFLTAPLLEFLLALYFLFADAMQLNDK 92
Query: 71 MKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGLF 113
+ L WP++D + + + +S+ A+ + + G+F
Sbjct: 93 WQGLCWPMMDFLRCVTAALIYFAISITAIAKYSDGASKAAGVF 135
>gi|32130526 chemokine-like factor superfamily 3 [Homo sapiens]
Length = 182
Score = 37.4 bits (85), Expect = 0.003
Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 11 RPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRL 70
R F S+KG + + L+ + ++ + A ++ E + L+F+ ++L+
Sbjct: 34 RAFLCSLKGRLLLAESGLSFITFICYVASSA-SAFLTAPLLEFLLALYFLFADAMQLNDK 92
Query: 71 MKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGLF 113
+ L WP++D + + + +S+ A+ + + G+F
Sbjct: 93 WQGLCWPMMDFLRCVTAALIYFAISITAIAKYSDGASKAAGVF 135
>gi|21389401 chemokine-like factor superfamily 3 [Homo sapiens]
Length = 182
Score = 37.4 bits (85), Expect = 0.003
Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 11 RPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRL 70
R F S+KG + + L+ + ++ + A ++ E + L+F+ ++L+
Sbjct: 34 RAFLCSLKGRLLLAESGLSFITFICYVASSA-SAFLTAPLLEFLLALYFLFADAMQLNDK 92
Query: 71 MKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGLF 113
+ L WP++D + + + +S+ A+ + + G+F
Sbjct: 93 WQGLCWPMMDFLRCVTAALIYFAISITAIAKYSDGASKAAGVF 135
>gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo
sapiens]
Length = 156
Score = 35.4 bits (80), Expect = 0.010
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 11 RPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRL 70
+ F S KG + LALT+ + F + Y+ E + L F+ LY + +
Sbjct: 27 KAFLTSHKGILLETELALTL--IIFICFTASISAYMAAALLEFFITLAFLFLYATQYYQR 84
Query: 71 MKWLFWPLLDIINSLVTTVFMLIVSVLAL 99
+ WP LD + + + L+VS A+
Sbjct: 85 FDRINWPCLDFLRCVSAIIIFLVVSFAAV 113
>gi|27886667 potassium voltage-gated channel, subfamily H, member 8
[Homo sapiens]
Length = 1107
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 34 TFFIIAQ-APEPYIVITGFEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSLVTTVFML 92
T+FII A P+ ++ F VTV+ LL +RL RL++ L LD + T V L
Sbjct: 301 TWFIIDLIAALPFDLLYAFNVTVVSLVHLLKTVRLLRLLRLL--QKLDRYSQHSTIVLTL 358
Query: 93 IVSVLALI 100
++S+ AL+
Sbjct: 359 LMSMFALL 366
>gi|31657099 CKLF-like MARVEL transmembrane domain containing 7
isoform b [Homo sapiens]
Length = 142
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 20 HVKMLRLALTVTSMTFFIIAQ--------APEPYIVITGFEVTVILFFILLYVLRLDRLM 71
H +L++A VT + FI + A + V+T ++ +IL F L+++ R R++
Sbjct: 44 HAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVL 103
Query: 72 KWLFWPL 78
+ WPL
Sbjct: 104 TCISWPL 110
>gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo
sapiens]
Length = 391
Score = 30.4 bits (67), Expect = 0.32
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 21 VKMLRLALTVTSMTFFIIAQ---APEPYIVITGFEVTV---ILFFILLYVLRLDRLMKWL 74
V + L + +TS+ +IA P +VI+ V + ++ FI L V+ ++ +
Sbjct: 236 VVITSLIVVITSLVVVLIAVIVVTPSLIVVISSLVVVIASLVVVFISLIVVISSLIV--V 293
Query: 75 FWPLLDIINSLVTTVFMLIVSVLALIPETTTLTV 108
L+ +I SLV + LIV + +L+ T+L V
Sbjct: 294 ITSLVVVITSLVVVITSLIVVITSLVVVITSLVV 327
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 27 ALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRL-------------MKW 73
+L V + + ++ P I G +T ++ I VL + L +
Sbjct: 61 SLVVVTTSLVMVITPPFAVITSLGVVITSLVVIITCLVLVITALGVVITSLGVVVTSLVM 120
Query: 74 LFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTV 108
+ PL+ +I L + L+V + +L+ T+LTV
Sbjct: 121 VITPLVAVITPLGVVITSLVVVITSLVMVITSLTV 155
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 26 LALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSL 85
L L+ +T + P ++ + V L +L+ V+ + + + L+ +I SL
Sbjct: 217 LWLSAPCITSLFVVIIPLVVVITSLIVVITSLVVVLIAVIVVTPSLIVVISSLVVVIASL 276
Query: 86 VTTVFMLIVSVLALIPETTTLTV 108
V LIV + +LI T+L V
Sbjct: 277 VVVFISLIVVISSLIVVITSLVV 299
>gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo
sapiens]
Length = 398
Score = 30.4 bits (67), Expect = 0.32
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 21 VKMLRLALTVTSMTFFIIAQ---APEPYIVITGFEVTV---ILFFILLYVLRLDRLMKWL 74
V + L + +TS+ +IA P +VI+ V + ++ FI L V+ ++ +
Sbjct: 243 VVITSLIVVITSLVVVLIAVIVVTPSLIVVISSLVVVIASLVVVFISLIVVISSLIV--V 300
Query: 75 FWPLLDIINSLVTTVFMLIVSVLALIPETTTLTV 108
L+ +I SLV + LIV + +L+ T+L V
Sbjct: 301 ITSLVVVITSLVVVITSLIVVITSLVVVITSLVV 334
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 27 ALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRL-------------MKW 73
+L V + + ++ P I G +T ++ I VL + L +
Sbjct: 68 SLVVVTTSLVMVITPPFAVITSLGVVITSLVVIITCLVLVITALGVVITSLGVVVTSLVM 127
Query: 74 LFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTV 108
+ PL+ +I L + L+V + +L+ T+LTV
Sbjct: 128 VITPLVAVITPLGVVITSLVVVITSLVMVITSLTV 162
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 26 LALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSL 85
L L+ +T + P ++ + V L +L+ V+ + + + L+ +I SL
Sbjct: 224 LWLSAPCITSLFVVIIPLVVVITSLIVVITSLVVVLIAVIVVTPSLIVVISSLVVVIASL 283
Query: 86 VTTVFMLIVSVLALIPETTTLTV 108
V LIV + +LI T+L V
Sbjct: 284 VVVFISLIVVISSLIVVITSLVV 306
>gi|31563398 chemokine-like factor superfamily 1 isoform 4 [Homo
sapiens]
Length = 116
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 79 LDIINSLVTTVFMLIVSVLALIPETT--TLTVGGGL 112
LD+ NS++T VF+ +V++LA+ + L VGG L
Sbjct: 27 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSL 62
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 26 LALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSL 85
+ L + F + A P+ ++ F+V V LL +RL RL++ L P LD +
Sbjct: 298 ICLHYVTTWFLLDVIAALPFDLLHAFKVNVYFGAHLLKTVRLLRLLRLL--PRLDRYSQY 355
Query: 86 VTTVFMLIVSVLALI 100
V L+++V AL+
Sbjct: 356 SAVVLTLLMAVFALL 370
>gi|6912446 potassium voltage-gated channel, subfamily H, member 4
[Homo sapiens]
Length = 1017
Score = 28.9 bits (63), Expect = 0.92
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 35 FFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIV 94
FFI A P+ ++ F +TV LL +RL RL++ L L+ + V L++
Sbjct: 309 FFIDLIAALPFDLLYIFNITVTSLVHLLKTVRLLRLLRLL--QKLERYSQCSAVVLTLLM 366
Query: 95 SVLALI 100
SV AL+
Sbjct: 367 SVFALL 372
>gi|210031196 transmembrane protein with metallophosphoesterase
domain isoform 1 [Homo sapiens]
Length = 453
Score = 28.9 bits (63), Expect = 0.92
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 14 CFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYI----VITGFEVTVILFFILLYVLRLDR 69
CF + V + LAL +S A EPY+ + +I+ F L + +++
Sbjct: 81 CFQLWKVVVLAFLALAHSSFFTMFFLVAEEPYLFSLAAYSCLGAYIIMLFFLFILSGMEQ 140
Query: 70 LMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGG 110
+ L W ++ SL T +++ LA + T L+V G
Sbjct: 141 AYQLLAWRSGRVVGSLEKTRKLVLRPALA-VGVTAVLSVAG 180
>gi|31563396 chemokine-like factor superfamily 1 isoform 3 [Homo
sapiens]
Length = 122
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 79 LDIINSLVTTVFMLIVSVLALIPETT--TLTVGGGL 112
+D+ NS++T VF+ +V++LA+ + L VGG L
Sbjct: 33 VDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSL 68
>gi|31563402 chemokine-like factor superfamily 1 isoform 5 [Homo
sapiens]
Length = 61
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 79 LDIINSLVTTVFMLIVSVLAL 99
LD+ NS++T VF+ +V++LA+
Sbjct: 27 LDLTNSIITAVFLSVVAILAM 47
>gi|42558283 gap junction protein beta 2 [Homo sapiens]
Length = 226
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 20/87 (22%)
Query: 29 TVTSMTFF-IIAQAPEPYIVITGFEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSLVT 87
T TS FF +I +A Y+ F+++ + RL+K WP + ++ V+
Sbjct: 135 TYTSSIFFRVIFEAAFMYV-----------FYVMYDGFSMQRLVKCNAWPCPNTVDCFVS 183
Query: 88 --------TVFMLIVSVLALIPETTTL 106
TVFM+ VS + ++ T L
Sbjct: 184 RPTEKTVFTVFMIAVSGICILLNVTEL 210
>gi|9966787 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 2 [Homo sapiens]
Length = 661
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 31 TSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSLVTTVF 90
TS+ IA + I G V ILF I + L ++ +WPL ++ + +
Sbjct: 191 TSLIGVFIAHSNVGIGTIVGSAVFNILFVIGMCALFSREILNLTWWPLFRDVSFYIVDLI 250
Query: 91 MLIVSVL 97
MLI+ L
Sbjct: 251 MLIIFFL 257
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 51 FEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVL 97
F V+LF +LL+V+ L KW +L I + VF L+VSVL
Sbjct: 604 FCAIVLLFIMLLFVILSIALCKWRMNKILGFIMFGLYFVF-LVVSVL 649
>gi|22296884 transmembrane protein 185A [Homo sapiens]
Length = 350
Score = 26.9 bits (58), Expect = 3.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 56 ILFFILLYVLRLDRLMKWLFW 76
+L F +L LRLD +++W +W
Sbjct: 21 LLLFSVLLALRLDGIIQWSYW 41
>gi|42542383 solute carrier family 28, member 1 isoform 2 [Homo
sapiens]
Length = 175
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 3 NVQPKIKHRPFCFSVKGHVKMLR---LALTVTSMTFFIIAQAPEPYIVITGFEVTVILFF 59
N+QP ++ R FC + H+++ R L T ++ F++ + F+ + LF
Sbjct: 64 NLQPALRARSFC---REHMQLFRWIGTGLLCTGLSAFLLVAC------LLDFQRALALFV 114
Query: 60 ILLYVLRL--DRLMKWLFWPLL 79
+ VL RL+K L P L
Sbjct: 115 LTCVVLTFLGHRLLKRLLGPKL 136
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.334 0.147 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,560,931
Number of Sequences: 37866
Number of extensions: 113556
Number of successful extensions: 452
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 57
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.