Guide to the Human Genome
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Name: CMTM1 Sequence: fasta or formatted (116aa) NCBI GI: 31563398
Description:

chemokine-like factor superfamily 1 isoform 4

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [231aa] chemokine-like factor superfamily 1 isoform 14
alt prot [286aa] chemokine-like factor superfamily 1 isoform 13
alt prot [169aa] chemokine-like factor superfamily 1 isoform 1
alt prot [114aa] chemokine-like factor superfamily 1 isoform 2
alt prot [122aa] chemokine-like factor superfamily 1 isoform 3
alt prot [61aa] chemokine-like factor superfamily 1 isoform 5
alt prot [28aa] chemokine-like factor superfamily 1 isoform 12
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         14           3
 C cysteine            2.6          3           2
 D aspartate           4.3          5           1
 E glutamate           6.9          8           1
 F phenylalanine       2.6          3           1
 G glycine             4.3          5           2
 H histidine           1.7          2           1
 I isoleucine          4.3          5           2
 K lysine              6.9          8           2
 L leucine            10.3         12           2
 M methionine          2.6          3           1
 N asparagine          2.6          3           1
 P proline             7.8          9           1
 Q glutamine           2.6          3           1
 R arginine            5.2          6           2
 S serine              6.0          7           2
 T threonine           6.9          8           2
 V valine              8.6         10           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine-like factor superfamily 1 isoform 4 
CMTM1                 0.966   chemokine-like factor superfamily 1 isoform 3 
CMTM1                 0.879   chemokine-like factor superfamily 1 isoform 1 
CMTM1                 0.748   chemokine-like factor superfamily 1 isoform 13 [Hom...
CMTM1                 0.456   chemokine-like factor superfamily 1 isoform 5 
CMTM1                 0.335   chemokine-like factor superfamily 1 isoform 2 
CMTM1                 0.204   chemokine-like factor superfamily 1 isoform 14 [Hom...
CMTM1                 0.160   chemokine-like factor superfamily 1 isoform 12 [Homo...
CKLF                  0.058   chemokine-like factor isoform a 
CKLF                  0.058   chemokine-like factor isoform b 
CKLF                  0.024   chemokine-like factor isoform e 
ZNF385A               0.019   zinc finger protein 385A isoform a 
ZNF385A               0.019   zinc finger protein 385A isoform c 
GRIA4                 0.010   glutamate receptor, ionotrophic, AMPA 4 isoform 3 p...
GRIA4                 0.010   glutamate receptor, ionotrophic, AMPA 4 isoform 3 p...
GRIA4                 0.010   glutamate receptor, ionotrophic, AMPA 4 isoform 2 p...
GRIA4                 0.010   glutamate receptor, ionotrophic, AMPA 4 isoform 1 p...
MCM4                  0.005   minichromosome maintenance complex component 4 [Homo...
MCM4                  0.005   minichromosome maintenance complex component 4 [Homo...
HDC                   0.005   histidine decarboxylase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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