Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CMTM3 Sequence: fasta or formatted (182aa) NCBI GI: 32130526
Description:

chemokine-like factor superfamily 3

Referenced in:

Testes and Sperm

Other entries for this name:
alt mRNA [182aa] chemokine-like factor superfamily 3
alt mRNA [182aa] chemokine-like factor superfamily 3
alt mRNA [182aa] chemokine-like factor superfamily 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         26           2
 C cysteine            2.2          4           1
 D aspartate           8.2         15           1
 E glutamate           3.8          7           3
 F phenylalanine       8.8         16           2
 G glycine             6.0         11           2
 H histidine           0.5          1           1
 I isoleucine          4.4          8           1
 K lysine              3.8          7           1
 L leucine            12.1         22           3
 M methionine          2.2          4           2
 N asparagine          1.6          3           1
 P proline             7.1         13           2
 Q glutamine           1.6          3           1
 R arginine            2.7          5           1
 S serine              7.7         14           2
 T threonine           4.9          9           2
 V valine              3.3          6           1
 W tryptophan          1.6          3           1
 Y tyrosine            2.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine-like factor superfamily 3 
CMTM3                 1.000   chemokine-like factor superfamily 3 
CMTM3                 1.000   chemokine-like factor superfamily 3 
CMTM3                 1.000   chemokine-like factor superfamily 3 
CMTM5                 0.211   chemokine-like factor superfamily 5 isoform a 
PLP2                  0.116   proteolipid protein 2 (colonic epithelium-enriched) [...
CMTM5                 0.098   chemokine-like factor superfamily 5 isoform c 
CMTM4                 0.066   chemokine-like factor superfamily 4 isoform 2 
CMTM4                 0.066   chemokine-like factor superfamily 4 isoform 1 
CKLF                  0.049   chemokine-like factor isoform a 
CMTM6                 0.043   CKLF-like MARVEL transmembrane domain containing 6 [H...
CKLF                  0.035   chemokine-like factor isoform e 
CMTM1                 0.035   chemokine-like factor superfamily 1 isoform 13 [Hom...
CMTM1                 0.032   chemokine-like factor superfamily 1 isoform 14 [Hom...
LOC100133770          0.032   PREDICTED: similar to vacuolar protein sorting 35 [...
VPS35                 0.032   vacuolar protein sorting 35 
CMTM1                 0.029   chemokine-like factor superfamily 1 isoform 1 
HOXB4                 0.026   homeobox B4 
CMTM1                 0.026   chemokine-like factor superfamily 1 isoform 2 
HS3ST4                0.020   heparan sulfate D-glucosaminyl 3-O-sulfotransferase...
ZIC5                  0.020   zinc finger protein of the cerebellum 5 
WAS                   0.017   Wiskott-Aldrich syndrome protein 
ZNF358                0.017   zinc finger protein 358 
PRCC                  0.017   papillary renal cell carcinoma translocation-associa...
PRCC                  0.017   papillary renal cell carcinoma translocation-associa...
LOC729580             0.014   PREDICTED: hypothetical protein 
LOC729580             0.014   PREDICTED: hypothetical protein 
LOC729580             0.014   PREDICTED: hypothetical protein 
FMNL2                 0.014   formin-like 2 
SEC24B                0.014   SEC24 (S. cerevisiae) homolog B isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press