Guide to the Human Genome
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Name: CKLF Sequence: fasta or formatted (99aa) NCBI GI: 32307154
Description:

chemokine-like factor isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {120aa} chemokine-like factor isoform d
alt prot {67aa} chemokine-like factor isoform c
alt prot {152aa} chemokine-like factor isoform a
alt prot {113aa} chemokine-like factor isoform e
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          5           1
 C cysteine            3.0          3           2
 D aspartate           3.0          3           1
 E glutamate           3.0          3           1
 F phenylalanine       5.1          5           1
 G glycine             6.1          6           3
 H histidine           3.0          3           1
 I isoleucine          6.1          6           2
 K lysine              9.1          9           2
 L leucine            13.1         13           2
 M methionine          3.0          3           1
 N asparagine          3.0          3           1
 P proline             6.1          6           1
 Q glutamine           2.0          2           1
 R arginine            3.0          3           1
 S serine              4.0          4           1
 T threonine           7.1          7           3
 V valine             13.1         13           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine-like factor isoform b 
CKLF                  0.857   chemokine-like factor isoform a 
CKLF                  0.594   chemokine-like factor isoform d 
CKLF                  0.571   chemokine-like factor isoform c 
CKLF                  0.406   chemokine-like factor isoform e 
CMTM1                 0.069   chemokine-like factor superfamily 1 isoform 13 [Hom...
CMTM1                 0.069   chemokine-like factor superfamily 1 isoform 4 
CMTM1                 0.069   chemokine-like factor superfamily 1 isoform 1 
CMTM1                 0.057   chemokine-like factor superfamily 1 isoform 3 
CMTM1                 0.017   chemokine-like factor superfamily 1 isoform 14 [Hom...
CMTM1                 0.017   chemokine-like factor superfamily 1 isoform 2 
CMTM1                 0.017   chemokine-like factor superfamily 1 isoform 5 
SLC35D1               0.011   solute carrier family 35 (UDP-glucuronic acid/UDP-N-...
SLC29A1               0.006   equilibrative nucleoside transporter 1 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
SLC5A3                0.006   solute carrier family 5 (inositol transporters), me...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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