Guide to the Human Genome
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Name: CMTM7 Sequence: fasta or formatted (142aa) NCBI GI: 31657099
Description:

CKLF-like MARVEL transmembrane domain containing 7 isoform b

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [175aa] CKLF-like MARVEL transmembrane domain containing 7 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         16           2
 C cysteine            4.2          6           1
 D aspartate           2.1          3           1
 E glutamate           1.4          2           1
 F phenylalanine       5.6          8           1
 G glycine             5.6          8           1
 H histidine           2.1          3           1
 I isoleucine          6.3          9           1
 K lysine              1.4          2           1
 L leucine            13.4         19           2
 M methionine          3.5          5           1
 N asparagine          0.7          1           1
 P proline             3.5          5           1
 Q glutamine           2.1          3           1
 R arginine            3.5          5           1
 S serine             12.0         17           2
 T threonine           7.0         10           2
 V valine              7.0         10           2
 W tryptophan          2.1          3           1
 Y tyrosine            4.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CKLF-like MARVEL transmembrane domain containing 7 i... 
CMTM7                 0.935   CKLF-like MARVEL transmembrane domain containing 7 i...
CKLF                  0.061   chemokine-like factor isoform d 
PLLP                  0.057   plasmolipin 
CMTM5                 0.053   chemokine-like factor superfamily 5 isoform c 
CMTM4                 0.050   chemokine-like factor superfamily 4 isoform 2 
CMTM4                 0.050   chemokine-like factor superfamily 4 isoform 1 
CMTM5                 0.042   chemokine-like factor superfamily 5 isoform a 
LOC100132782          0.023   PREDICTED: hypothetical protein 
CKLF                  0.023   chemokine-like factor isoform e 
CKLF                  0.023   chemokine-like factor isoform a 
LOC100130897          0.019   PREDICTED: hypothetical protein 
LOC100130897          0.019   PREDICTED: hypothetical protein 
LOC100133741          0.019   PREDICTED: hypothetical protein 
ABCA13                0.015   ATP binding cassette, sub-family A (ABC1), member 13...
LOC100292298          0.015   PREDICTED: hypothetical protein 
LOC100288422          0.015   PREDICTED: hypothetical protein XP_002342827 
HECW1                 0.011   NEDD4-like ubiquitin-protein ligase 1 
SIDT1                 0.011   SID1 transmembrane family, member 1 
NUP153                0.011   nucleoporin 153kDa 
LOC100293985          0.011   PREDICTED: hypothetical protein 
LOC100289986          0.011   PREDICTED: hypothetical protein XP_002346657 
LOC100288009          0.011   PREDICTED: hypothetical protein XP_002342502 
LOC100132107          0.011   PREDICTED: hypothetical protein 
MLLT6                 0.011   myeloid/lymphoid or mixed-lineage leukemia (trithora...
CLIP3                 0.011   CAP-GLY domain containing linker protein 3 
SCN5A                 0.008   voltage-gated sodium channel type V alpha isoform f...
SCN5A                 0.008   voltage-gated sodium channel type V alpha isoform e...
SCN5A                 0.008   voltage-gated sodium channel type V alpha isoform a ...
SCN5A                 0.008   voltage-gated sodium channel type V alpha isoform b ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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