Guide to the Human Genome
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Name: CKLF Sequence: fasta or formatted (120aa) NCBI GI: 32307156
Description:

chemokine-like factor isoform d

Not currently referenced in the text

Other entries for this name:
alt prot {99aa} chemokine-like factor isoform b
alt prot {67aa} chemokine-like factor isoform c
alt prot {152aa} chemokine-like factor isoform a
alt prot {113aa} chemokine-like factor isoform e
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          7           1
 C cysteine            2.5          3           2
 D aspartate           2.5          3           1
 E glutamate           3.3          4           1
 F phenylalanine       8.3         10           2
 G glycine             3.3          4           1
 H histidine           2.5          3           1
 I isoleucine          6.7          8           2
 K lysine              8.3         10           2
 L leucine            15.0         18           2
 M methionine          3.3          4           1
 N asparagine          1.7          2           1
 P proline             6.7          8           1
 Q glutamine           2.5          3           1
 R arginine            4.2          5           1
 S serine              2.5          3           1
 T threonine           5.0          6           1
 V valine             10.8         13           1
 W tryptophan          1.7          2           1
 Y tyrosine            3.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine-like factor isoform d 
CKLF                  0.923   chemokine-like factor isoform a 
CKLF                  0.633   chemokine-like factor isoform e 
CKLF                  0.471   chemokine-like factor isoform b 
CKLF                  0.416   chemokine-like factor isoform c 
CMTM1                 0.208   chemokine-like factor superfamily 1 isoform 14 [Hom...
CMTM1                 0.208   chemokine-like factor superfamily 1 isoform 13 [Hom...
CMTM1                 0.154   chemokine-like factor superfamily 1 isoform 2 
CMTM1                 0.154   chemokine-like factor superfamily 1 isoform 1 
CMTM7                 0.072   CKLF-like MARVEL transmembrane domain containing 7 i...
CMTM5                 0.045   chemokine-like factor superfamily 5 isoform c 
CMTM2                 0.036   chemokine-like factor superfamily 2 
CMTM7                 0.032   CKLF-like MARVEL transmembrane domain containing 7 i...
CMTM3                 0.023   chemokine-like factor superfamily 3 
CMTM3                 0.023   chemokine-like factor superfamily 3 
CMTM3                 0.023   chemokine-like factor superfamily 3 
CMTM3                 0.023   chemokine-like factor superfamily 3 
TMEM185A              0.009   transmembrane protein 185A 
SLC28A1               0.009   solute carrier family 28, member 1 isoform 2 
SLC28A1               0.009   solute carrier family 28, member 1 isoform 1 
CMTM5                 0.009   chemokine-like factor superfamily 5 isoform a 
HSD3B7                0.005   hydroxy-delta-5-steroid dehydrogenase, 3 beta- and s...
OR10G3                0.005   olfactory receptor, family 10, subfamily G, member 3...
ODF4                  0.005   outer dense fiber of sperm tails 4 
KCNH8                 0.005   potassium voltage-gated channel, subfamily H, member...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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