Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 93141016
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|93141016 motile sperm domain containing 3 isoform b [Homo
sapiens]
(225 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|93141016 motile sperm domain containing 3 isoform b [Homo sap... 457 e-129
gi|13122608 motile sperm domain containing 3 isoform a [Homo sap... 449 e-126
gi|93141014 motile sperm domain containing 3 isoform a [Homo sap... 449 e-126
gi|93141012 motile sperm domain containing 3 isoform a [Homo sap... 449 e-126
gi|9506543 motile sperm domain containing 1 [Homo sapiens] 140 9e-34
gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo sa... 39 0.004
gi|22749197 motile sperm domain containing 2 [Homo sapiens] 35 0.052
gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase... 35 0.052
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 35 0.052
gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo s... 35 0.068
gi|239752710 PREDICTED: similar to coiled-coil-helix-coiled-coil... 34 0.088
gi|239747238 PREDICTED: similar to coiled-coil-helix-coiled-coil... 34 0.088
gi|239741059 PREDICTED: similar to coiled-coil-helix-coiled-coil... 34 0.088
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 34 0.088
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 34 0.12
gi|32469509 zinc finger and BTB domain containing 12 [Homo sapiens] 34 0.12
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 33 0.15
gi|112421108 capicua homolog [Homo sapiens] 33 0.15
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 33 0.20
gi|94721252 vesicle-associated membrane protein-associated prote... 33 0.26
gi|94721250 vesicle-associated membrane protein-associated prote... 33 0.26
gi|166999098 glutamate receptor, metabotropic 1 isoform alpha pr... 33 0.26
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 33 0.26
gi|47524184 hypothetical protein LOC29798 [Homo sapiens] 33 0.26
gi|40805108 putative small membrane protein NID67 [Homo sapiens] 33 0.26
gi|55750053 atrophin-1 [Homo sapiens] 32 0.34
gi|55750041 atrophin-1 [Homo sapiens] 32 0.34
gi|210032580 SET domain containing 1B [Homo sapiens] 32 0.34
gi|62955044 F-box protein 42 [Homo sapiens] 32 0.34
gi|239747182 PREDICTED: hypothetical protein XP_002343934 [Homo ... 32 0.44
>gi|93141016 motile sperm domain containing 3 isoform b [Homo
sapiens]
Length = 225
Score = 457 bits (1175), Expect = e-129
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MRRGAPQDQELVGPGPPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNP 60
MRRGAPQDQELVGPGPPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNP
Sbjct: 1 MRRGAPQDQELVGPGPPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNP 60
Query: 61 TGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDIHYDVQDRFRIELSEEGAEGRVVGRKD 120
TGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDIHYDVQDRFRIELSEEGAEGRVVGRKD
Sbjct: 61 TGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDIHYDVQDRFRIELSEEGAEGRVVGRKD 120
Query: 121 ITSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSSFLLFLLTGIV 180
ITSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSSFLLFLLTGIV
Sbjct: 121 ITSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSSFLLFLLTGIV 180
Query: 181 SVAFLLLPLPDELGSQLPQVLHVSLGQKLVAAYVLGLLTMVFLRT 225
SVAFLLLPLPDELGSQLPQVLHVSLGQKLVAAYVLGLLTMVFLRT
Sbjct: 181 SVAFLLLPLPDELGSQLPQVLHVSLGQKLVAAYVLGLLTMVFLRT 225
>gi|13122608 motile sperm domain containing 3 isoform a [Homo
sapiens]
Length = 235
Score = 449 bits (1154), Expect = e-126
Identities = 225/235 (95%), Positives = 225/235 (95%), Gaps = 10/235 (4%)
Query: 1 MRRGAPQDQELVGPGPPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNP 60
MRRGAPQDQELVGPGPPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNP
Sbjct: 1 MRRGAPQDQELVGPGPPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNP 60
Query: 61 TGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDI----------HYDVQDRFRIELSEEG 110
TGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDI HYDVQDRFRIELSEEG
Sbjct: 61 TGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDIVIRHVAPIPSHYDVQDRFRIELSEEG 120
Query: 111 AEGRVVGRKDITSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSS 170
AEGRVVGRKDITSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSS
Sbjct: 121 AEGRVVGRKDITSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSS 180
Query: 171 FLLFLLTGIVSVAFLLLPLPDELGSQLPQVLHVSLGQKLVAAYVLGLLTMVFLRT 225
FLLFLLTGIVSVAFLLLPLPDELGSQLPQVLHVSLGQKLVAAYVLGLLTMVFLRT
Sbjct: 181 FLLFLLTGIVSVAFLLLPLPDELGSQLPQVLHVSLGQKLVAAYVLGLLTMVFLRT 235
>gi|93141014 motile sperm domain containing 3 isoform a [Homo
sapiens]
Length = 235
Score = 449 bits (1154), Expect = e-126
Identities = 225/235 (95%), Positives = 225/235 (95%), Gaps = 10/235 (4%)
Query: 1 MRRGAPQDQELVGPGPPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNP 60
MRRGAPQDQELVGPGPPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNP
Sbjct: 1 MRRGAPQDQELVGPGPPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNP 60
Query: 61 TGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDI----------HYDVQDRFRIELSEEG 110
TGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDI HYDVQDRFRIELSEEG
Sbjct: 61 TGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDIVIRHVAPIPSHYDVQDRFRIELSEEG 120
Query: 111 AEGRVVGRKDITSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSS 170
AEGRVVGRKDITSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSS
Sbjct: 121 AEGRVVGRKDITSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSS 180
Query: 171 FLLFLLTGIVSVAFLLLPLPDELGSQLPQVLHVSLGQKLVAAYVLGLLTMVFLRT 225
FLLFLLTGIVSVAFLLLPLPDELGSQLPQVLHVSLGQKLVAAYVLGLLTMVFLRT
Sbjct: 181 FLLFLLTGIVSVAFLLLPLPDELGSQLPQVLHVSLGQKLVAAYVLGLLTMVFLRT 235
>gi|93141012 motile sperm domain containing 3 isoform a [Homo
sapiens]
Length = 235
Score = 449 bits (1154), Expect = e-126
Identities = 225/235 (95%), Positives = 225/235 (95%), Gaps = 10/235 (4%)
Query: 1 MRRGAPQDQELVGPGPPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNP 60
MRRGAPQDQELVGPGPPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNP
Sbjct: 1 MRRGAPQDQELVGPGPPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNP 60
Query: 61 TGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDI----------HYDVQDRFRIELSEEG 110
TGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDI HYDVQDRFRIELSEEG
Sbjct: 61 TGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDIVIRHVAPIPSHYDVQDRFRIELSEEG 120
Query: 111 AEGRVVGRKDITSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSS 170
AEGRVVGRKDITSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSS
Sbjct: 121 AEGRVVGRKDITSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSS 180
Query: 171 FLLFLLTGIVSVAFLLLPLPDELGSQLPQVLHVSLGQKLVAAYVLGLLTMVFLRT 225
FLLFLLTGIVSVAFLLLPLPDELGSQLPQVLHVSLGQKLVAAYVLGLLTMVFLRT
Sbjct: 181 FLLFLLTGIVSVAFLLLPLPDELGSQLPQVLHVSLGQKLVAAYVLGLLTMVFLRT 235
>gi|9506543 motile sperm domain containing 1 [Homo sapiens]
Length = 213
Score = 140 bits (353), Expect = 9e-34
Identities = 84/204 (41%), Positives = 123/204 (60%), Gaps = 15/204 (7%)
Query: 32 VPVLVFPPDLVFRADQRSGPRQLLTLYNPTGTALRFRVLCTAPAKYTVFDAEGYVKPQSC 91
+PV VFP +L+F AD +S +Q+LTLYNP AL+F+VLCT P KY V DA G VKPQ C
Sbjct: 15 LPVFVFPTELIFYADDQSTHKQVLTLYNPYEFALKFKVLCTTPNKYVVVDAAGAVKPQCC 74
Query: 92 IDI----------HYDVQDRFRIELSEEGAEGRVVGRKDITSILRAPAYPLELQGQPDPA 141
+DI HY V D+FR+++SE+ ++ + +GRK++ + L A + Q + +
Sbjct: 75 VDIVIRHRDVRSCHYGVIDKFRLQVSEQ-SQRKALGRKEVVATLLPSA---KEQQKEEEE 130
Query: 142 PRPGPPAGTPPPTARHFQEHPRQQLATSSFLLFLLTGIVSVAFLLLPLPDELGSQLPQVL 201
R + FQ R +++ LL + G+V +A L+LP ++ S +P L
Sbjct: 131 KRLKEHLTESLFFEQSFQPENR-AVSSGPSLLTVFLGVVCIAALMLPTLGDVESLVPLYL 189
Query: 202 HVSLGQKLVAAYVLGLLTMVFLRT 225
H+S+ QKLVAAY+LGL+TM LRT
Sbjct: 190 HLSVNQKLVAAYILGLITMAILRT 213
>gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo
sapiens]
Length = 561
Score = 38.9 bits (89), Expect = 0.004
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 7 QDQELVGPGPPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSG-----PRQLLTLYNPT 61
+DQE+ PP R + PP GP P PDL+++ + SG PR L +Y+
Sbjct: 96 EDQEVYVVPPPARPCPTSGPPAGPCPP----SPDLIYKIPRASGTQLAAPRDALEVYDVP 151
Query: 62 GTALR 66
TALR
Sbjct: 152 PTALR 156
>gi|22749197 motile sperm domain containing 2 [Homo sapiens]
Length = 518
Score = 35.0 bits (79), Expect = 0.052
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 33 PVLVFPP--DLVFRADQRSGPRQLLTLYNPTGTALRFRVLCTAPAKYTVFDAEGYVKPQS 90
P+L P +L F + + + L+ L N T + F+V TAP KY V + P +
Sbjct: 326 PLLHISPAEELYFGSTESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGA 385
Query: 91 CIDI--------HYDVQDRFRIELSE 108
+DI QDRF I +E
Sbjct: 386 SVDIVVSPHGGLTVSAQDRFLIMAAE 411
>gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4
[Homo sapiens]
Length = 456
Score = 35.0 bits (79), Expect = 0.052
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 138 PDPAPRPGPPAGTPPPTARHFQEHPRQQLATSSFLLFLLTGIVSVAFLLLPLPDELGS-Q 196
P P P P PP PPP + P ++ LLF+ T +SV +L L GS Q
Sbjct: 7 PPPPPPPPPPLAAPPPPGASAKGPPARK------LLFMCTLSLSVTYLCYSLLGGSGSLQ 60
Query: 197 LPQVLHVSLG 206
P L S G
Sbjct: 61 FPLALQESPG 70
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 35.0 bits (79), Expect = 0.052
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 108 EEGAEGRVVGRKDITSILRAPAYPLELQGQPDPAPRPGPPAGTPPP 153
+ G++ VV ++ +L PA P ++G P P P PP TPPP
Sbjct: 312 DHGSDPVVVEDVNLPGMLPFPAQPPVVEGPPPPGLPPPPPILTPPP 357
>gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo
sapiens]
Length = 468
Score = 34.7 bits (78), Expect = 0.068
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 16 PPGRGSRGAPPPLGPVVPVLVFPPDLVFRADQRSG-----PRQLLTLYNPTGTALR 66
PP R + PP GP P PDL+++ + SG PR L +Y+ TALR
Sbjct: 12 PPARPCPTSGPPAGPCPP----SPDLIYKIPRASGTQLAAPRDALEVYDVPPTALR 63
>gi|239752710 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
[Homo sapiens]
Length = 184
Score = 34.3 bits (77), Expect = 0.088
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 114 RVVGRKDITSILRAPAYPL-ELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQ-----QLA 167
R+ G + TS + PA +++ P PAP PPA PP T PRQ Q+A
Sbjct: 34 RIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMA 93
Query: 168 TSS 170
T++
Sbjct: 94 TTA 96
>gi|239747238 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
isoform 3 [Homo sapiens]
Length = 184
Score = 34.3 bits (77), Expect = 0.088
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 114 RVVGRKDITSILRAPAYPL-ELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQ-----QLA 167
R+ G + TS + PA +++ P PAP PPA PP T PRQ Q+A
Sbjct: 34 RIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMA 93
Query: 168 TSS 170
T++
Sbjct: 94 TTA 96
>gi|239741059 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
isoform 3 [Homo sapiens]
Length = 184
Score = 34.3 bits (77), Expect = 0.088
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 114 RVVGRKDITSILRAPAYPL-ELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQ-----QLA 167
R+ G + TS + PA +++ P PAP PPA PP T PRQ Q+A
Sbjct: 34 RIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMA 93
Query: 168 TSS 170
T++
Sbjct: 94 TTA 96
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 34.3 bits (77), Expect = 0.088
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 127 APAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSSFL 172
APA P QP P P PG +G +R +HP + ++++S L
Sbjct: 1652 APAAPAPAAPQPGPDPPPGTDSGIEEVDSRSSSDHPLETISSASTL 1697
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 136 GQPDPAPR-PGPPAGTPPPTARHFQEHPRQQ 165
G P P PR P P PPPT H H +
Sbjct: 1372 GAPQPPPRPPSPRYEAPPPTPHHHSPHAHHE 1402
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 33.9 bits (76), Expect = 0.12
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 128 PAYPLELQGQPDPAP-----RPGPPAGTPPPTARHFQEHPRQQLA 167
PA PLE + P P P RP PP PPP+ R Q P+ LA
Sbjct: 1094 PAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGRS-QPSPQAGLA 1137
>gi|32469509 zinc finger and BTB domain containing 12 [Homo sapiens]
Length = 459
Score = 33.9 bits (76), Expect = 0.12
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 16/95 (16%)
Query: 72 TAPAKYTVFDAEGYVKPQSCIDIHYDVQ------DRF---RIELSEEG-AEGRVVGRKDI 121
T ++ V D Y+ S + + + V+ +F +I L E+G +E +V
Sbjct: 90 TGALEFAVRDIVNYLTAASYLQMEHVVEKCRNALSQFIEPKIGLKEDGVSEASLVSSISA 149
Query: 122 TSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTAR 156
T L PA P PAP+P PP PPP R
Sbjct: 150 TKSLLPPART------PKPAPKPPPPPPLPPPLLR 178
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 33.5 bits (75), Expect = 0.15
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 131 PLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSSFLLFLLTGIVSVAFLLLPLP 190
PL+ P P P PP PPP P+ QL S L L I+ LP
Sbjct: 1989 PLQAPPPTPPPPPPPPPPPPPPPPPPPPSAPPQVQLPV-SLDLPLFPSIMMQPVQHPALP 2047
Query: 191 DELGSQLPQVLHVSLGQKLVAAYVLGL 217
+L QLPQ+ +S + LGL
Sbjct: 2048 PQLALQLPQMDALSADLTQLCQQQLGL 2074
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 33.5 bits (75), Expect = 0.15
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 108 EEGAEGRVVGRKDITSILRAPAYPLELQGQPDPAPRPG----PPAGTPPPTARHFQEHP 162
+ GA G+ G + IL P P +LQ P PAP PG P+G P T+ F P
Sbjct: 812 QPGALGKAGGITQVQYIL--PTLPQQLQVAPAPAPAPGTKAAAPSGPAPTTSIRFTLPP 868
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 33.1 bits (74), Expect = 0.20
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 17/72 (23%)
Query: 127 APAYPLELQGQPDPAPRPGPPAGTPPPTARHFQEHPRQQLATSSFLLFLLTGIVSVAFLL 186
AP PL P PAP P P +GTP P L + LL G VS+A
Sbjct: 1470 APREPL-----PPPAPEPSPHSGTPQPA-----------LGQPAPLLPAAVGAVSLATSQ 1513
Query: 187 LPLPDELGSQLP 198
LP P LG +P
Sbjct: 1514 LPSP-PLGPTVP 1524
>gi|94721252 vesicle-associated membrane protein-associated
protein A isoform 2 [Homo sapiens]
Length = 249
Score = 32.7 bits (73), Expect = 0.26
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 34 VLVFPPDLVFRADQRSGPRQLLTLYNPTGTALRFRVLCTAPAKYTVFDAEGYVKPQSCID 93
VL P DL F+ L L NP+ + F+V TAP +Y V G + P S +
Sbjct: 16 VLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVT 75
Query: 94 IHYDVQ 99
+ +Q
Sbjct: 76 VSVMLQ 81
>gi|94721250 vesicle-associated membrane protein-associated
protein A isoform 1 [Homo sapiens]
Length = 294
Score = 32.7 bits (73), Expect = 0.26
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 34 VLVFPPDLVFRADQRSGPRQLLTLYNPTGTALRFRVLCTAPAKYTVFDAEGYVKPQSCID 93
VL P DL F+ L L NP+ + F+V TAP +Y V G + P S +
Sbjct: 16 VLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVT 75
Query: 94 IHYDVQ 99
+ +Q
Sbjct: 76 VSVMLQ 81
>gi|166999098 glutamate receptor, metabotropic 1 isoform alpha
precursor [Homo sapiens]
Length = 1194
Score = 32.7 bits (73), Expect = 0.26
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 99 QDRFRIELSEEGAEGRVVGRKDITSILRAPAYPLELQGQPDPA--PRPGPPAGTPPPTAR 156
+D I S G+ VV R+ + S P P L + P P P G PPP +
Sbjct: 961 EDAQPIRFSPPGSPSMVVHRR-VPSAATTPPLPSHLTAEETPLFLAEPALPKGLPPPLQQ 1019
Query: 157 HFQEHPRQQLATSSFLLFLLTGIVS 181
Q P+Q+ L+ L G+VS
Sbjct: 1020 QQQPPPQQK-----SLMDQLQGVVS 1039
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 32.7 bits (73), Expect = 0.26
Identities = 41/156 (26%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 20 GSRGAPPPLGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNPTGTALRFRVLCTAPAKYTV 79
G PPPL P + ++V ++ PR L+L+ P G A R PA
Sbjct: 375 GGAALPPPLLPPGDSEIEEGEIVQPEEE---PRLALSLFRPGGRAAR-----PTPAASAT 426
Query: 80 FDAEGYVKPQS----------CIDIHYDVQDRFRIELSEEG-----AEGRVVG----RKD 120
A+ +P + + D + +++L E A+ R G RK
Sbjct: 427 PTAQPLPQPPAPRAPEGDDFLSLHAESDGEGALQVDLGEPAPAPPAADSRWGGLDLRRKI 486
Query: 121 ITSILRAPAYPLELQGQPDPAPRPGPPAGTPPPTAR 156
+T R Y Q P PAP P P A PPT +
Sbjct: 487 LTQ--RRERYR---QRSPSPAPAPAPAAAAGPPTRK 517
>gi|47524184 hypothetical protein LOC29798 [Homo sapiens]
Length = 203
Score = 32.7 bits (73), Expect = 0.26
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 125 LRAPAYPLELQGQPDPA--PRPGPPAGTPPPTARHFQEHP 162
L APA E+Q P PA P P P A +PP TA +E P
Sbjct: 8 LSAPASGAEIQRFPVPAVEPVPAPGADSPPGTALELEEAP 47
>gi|40805108 putative small membrane protein NID67 [Homo sapiens]
Length = 135
Score = 32.7 bits (73), Expect = 0.26
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 138 PDPAPRPGPPAGTPPPTARH----FQEHPRQQL 166
P+PA RPG PPP AR FQE PR ++
Sbjct: 65 PEPAARPGRSCALPPPGARRSRGTFQELPRAEV 97
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 32.3 bits (72), Expect = 0.34
Identities = 40/153 (26%), Positives = 50/153 (32%), Gaps = 7/153 (4%)
Query: 17 PGRGSRGAPPPLGPVVPVLVFPPDL-VFRADQRSGPRQLLTLYNPTGTALRFRVLCTAPA 75
P +G +GAP P PV V L A S P T P R +P
Sbjct: 590 PSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRA--PSPG 647
Query: 76 KYTVFDAEGYVKPQSCIDIHYDVQDRFRIELSEEGAEGRVVGRKDITSILRAPAYPLELQ 135
Y GY KP S +R G G + PA P
Sbjct: 648 AYKTATPPGY-KPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGP---S 703
Query: 136 GQPDPAPRPGPPAGTPPPTARHFQEHPRQQLAT 168
G P P P PA PP +A ++ P ++ T
Sbjct: 704 GLPSLPPPPAAPASGPPLSATQIKQEPAEEYET 736
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 32.3 bits (72), Expect = 0.34
Identities = 40/153 (26%), Positives = 50/153 (32%), Gaps = 7/153 (4%)
Query: 17 PGRGSRGAPPPLGPVVPVLVFPPDL-VFRADQRSGPRQLLTLYNPTGTALRFRVLCTAPA 75
P +G +GAP P PV V L A S P T P R +P
Sbjct: 590 PSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRA--PSPG 647
Query: 76 KYTVFDAEGYVKPQSCIDIHYDVQDRFRIELSEEGAEGRVVGRKDITSILRAPAYPLELQ 135
Y GY KP S +R G G + PA P
Sbjct: 648 AYKTATPPGY-KPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGP---S 703
Query: 136 GQPDPAPRPGPPAGTPPPTARHFQEHPRQQLAT 168
G P P P PA PP +A ++ P ++ T
Sbjct: 704 GLPSLPPPPAAPASGPPLSATQIKQEPAEEYET 736
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 32.3 bits (72), Expect = 0.34
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 108 EEGAEGRVVGRKDITSILRAPAYPLELQGQPDPAPRPGPPAGTPPP 153
EE G +D RAPA P +P +PG P G PPP
Sbjct: 412 EEPTATAAFGARDSGEFRRAPAPPPLPPAEPLAKEKPGTPPGPPPP 457
>gi|62955044 F-box protein 42 [Homo sapiens]
Length = 717
Score = 32.3 bits (72), Expect = 0.34
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 136 GQPDPAPRPGPPAG---TPPPTARHFQEHPRQQL 166
G+ P PRPGP G + PP AR HP Q L
Sbjct: 596 GETVPIPRPGPAQGDGHSLPPIARRLGHHPPQSL 629
>gi|239747182 PREDICTED: hypothetical protein XP_002343934 [Homo
sapiens]
Length = 130
Score = 32.0 bits (71), Expect = 0.44
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 125 LRAPAYPLELQGQPDPA--PRPGPPAGTPPPTARHFQEHP 162
L APA E+Q P PA P P P A +PP TA +E P
Sbjct: 8 LSAPASGAEIQLFPVPAVEPVPAPGADSPPGTALELEEAP 47
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.142 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,102,868
Number of Sequences: 37866
Number of extensions: 777718
Number of successful extensions: 9373
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 181
Number of HSP's that attempted gapping in prelim test: 7816
Number of HSP's gapped (non-prelim): 1696
length of query: 225
length of database: 18,247,518
effective HSP length: 99
effective length of query: 126
effective length of database: 14,498,784
effective search space: 1826846784
effective search space used: 1826846784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.