BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|93141005 lunatic fringe isoform b [Homo sapiens] (361 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|93141005 lunatic fringe isoform b [Homo sapiens] 738 0.0 gi|93140999 lunatic fringe isoform a [Homo sapiens] 729 0.0 gi|74271816 radical fringe [Homo sapiens] 348 3e-96 gi|21536461 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransfer... 334 6e-92 gi|154689817 beta 1,3-galactosyltransferase-like [Homo sapiens] 64 2e-10 gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens] 49 7e-06 gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens] 49 7e-06 gi|148806884 AKT1 substrate 1 (proline-rich) [Homo sapiens] 42 9e-04 gi|148806906 AKT1 substrate 1 (proline-rich) [Homo sapiens] 42 9e-04 gi|148806896 AKT1 substrate 1 (proline-rich) [Homo sapiens] 42 9e-04 gi|4758392 forkhead box D1 [Homo sapiens] 42 0.001 gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta... 41 0.002 gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 41 0.002 gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 40 0.003 gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ... 40 0.003 gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 39 0.006 gi|54873602 hypothetical protein LOC220382 [Homo sapiens] 38 0.012 gi|12751477 forkhead box L2 [Homo sapiens] 38 0.016 gi|110832843 TBP-associated factor 4 [Homo sapiens] 38 0.016 gi|5454106 TBP-related factor 10 [Homo sapiens] 38 0.016 gi|39812378 RAN binding protein 9 [Homo sapiens] 37 0.027 gi|119508426 alpha 3 type IX collagen [Homo sapiens] 37 0.036 gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap... 37 0.036 gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 36 0.047 gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 36 0.047 gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 36 0.047 gi|21687188 hypothetical protein LOC146325 [Homo sapiens] 36 0.047 gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 36 0.047 gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 36 0.047 gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 36 0.061 >gi|93141005 lunatic fringe isoform b [Homo sapiens] Length = 361 Score = 738 bits (1904), Expect = 0.0 Identities = 361/361 (100%), Positives = 361/361 (100%) Query: 1 MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA 60 MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA Sbjct: 1 MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA 60 Query: 61 AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK 120 AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK Sbjct: 61 AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK 120 Query: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK 180 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK Sbjct: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK 180 Query: 181 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV 240 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV Sbjct: 181 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV 240 Query: 241 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL 300 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL Sbjct: 241 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL 300 Query: 301 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRWG 360 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRWG Sbjct: 301 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRWG 360 Query: 361 N 361 N Sbjct: 361 N 361 >gi|93140999 lunatic fringe isoform a [Homo sapiens] Length = 379 Score = 729 bits (1882), Expect = 0.0 Identities = 358/359 (99%), Positives = 359/359 (100%) Query: 1 MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA 60 MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA Sbjct: 1 MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA 60 Query: 61 AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK 120 AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK Sbjct: 61 AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK 120 Query: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK 180 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK Sbjct: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK 180 Query: 181 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV 240 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV Sbjct: 181 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV 240 Query: 241 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL 300 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL Sbjct: 241 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL 300 Query: 301 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRW 359 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSR+ Sbjct: 301 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRF 359 >gi|74271816 radical fringe [Homo sapiens] Length = 331 Score = 348 bits (894), Expect = 3e-96 Identities = 185/303 (61%), Positives = 219/303 (72%), Gaps = 6/303 (1%) Query: 63 APGALVRDVHSLSEYFS--LLTRARRDAGPPPGAAPRPADGHP--RPLAEPLAPRDVFIA 118 A GAL R +L+ + LL P P P PA P RP A L P DVFIA Sbjct: 4 ARGALCRACLALAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLRPDDVFIA 63 Query: 119 VKTTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVI-TNCSAAHSRQAL 177 VKTT+K H RL LLL TWISR ++ TFIFTDG+D L G+ VI TNCSA +RQAL Sbjct: 64 VKTTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAVRTRQAL 123 Query: 178 SCKMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAM 237 CKM+VEYD+FIESGRKWFCHVDDDNYVN R+LL LL+S+ ++DVY+G+PSLD PI+A Sbjct: 124 CCKMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPIEAT 183 Query: 238 ERVSENK-VRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYI 296 ERV + V V FWFATGGAGFC+SRGLALKMSPWAS G FM+TAE++RLPDDCT+GYI Sbjct: 184 ERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAEQVRLPDDCTVGYI 243 Query: 297 VEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADP 356 VE LLG L+ S LFHSHLENLQ++P L +QVTLS+G EN N V+V G FS+ DP Sbjct: 244 VEGLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLSHGGPENPHNVVNVAGGFSLHQDP 303 Query: 357 SRW 359 +R+ Sbjct: 304 TRF 306 >gi|21536461 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Homo sapiens] Length = 321 Score = 334 bits (857), Expect = 6e-92 Identities = 164/263 (62%), Positives = 197/263 (74%), Gaps = 1/263 (0%) Query: 98 PADGHPRPLAEPLAPRDVFIAVKTTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALA 157 P P P L DVFIAVKTT+ FHR RL+LLL+TW+SR +E TF+FTD D+ L Sbjct: 39 PELSQPNPGPPKLQLHDVFIAVKTTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQ 98 Query: 158 RHTGN-VVITNCSAAHSRQALSCKMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLAS 216 G+ +V+TNCSA HS ALSCKMA E+D F+ SG +WFCHVDDDNYVN RALL+LL + Sbjct: 99 ERLGSHLVVTNCSAEHSHPALSCKMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRA 158 Query: 217 YPHTRDVYVGKPSLDRPIQAMERVSENKVRPVHFWFATGGAGFCISRGLALKMSPWASGG 276 +P RDVYVG+PSL+RPI A E N+ R V FWFATGGAGFCI+R LALKM+PWASG Sbjct: 159 FPLARDVYVGRPSLNRPIHASEPQPHNRTRLVQFWFATGGAGFCINRKLALKMAPWASGS 218 Query: 277 HFMNTAERIRLPDDCTIGYIVEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGM 336 FM+T+ IRLPDDCT+GYI+E LG L S LFHSHLE LQ + T++L EQVTLSYG+ Sbjct: 219 RFMDTSALIRLPDDCTMGYIIECKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGV 278 Query: 337 FENKRNAVHVKGPFSVEADPSRW 359 FE K N + ++GPFS E DPSR+ Sbjct: 279 FEGKLNVIKLQGPFSPEEDPSRF 301 >gi|154689817 beta 1,3-galactosyltransferase-like [Homo sapiens] Length = 498 Score = 64.3 bits (155), Expect = 2e-10 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 32/230 (13%) Query: 108 EPLAPRDVFIAVKTTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITN 167 +P+ +D+F+AVKT KKFH R+ ++ +TW S+ + + ++D + ++ T ++ I N Sbjct: 262 KPVKKKDIFVAVKTCKKFHGDRIPIVKQTWESQASLIEY-YSDYTENSIP--TVDLGIPN 318 Query: 168 CSAAHSRQALSCKMAVEYDRFIESGR---KWFCHVDDDNYVNLRALLRLLASYPHTRDVY 224 H + + +RF+ + W VDDD +++ L LL+ Y V+ Sbjct: 319 TDRGHCGKTFAI-----LERFLNRSQDKTAWLVIVDDDTLISISRLQHLLSCYDSGEPVF 373 Query: 225 VGKPSLDRPIQAMERVSENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAER 284 +G ER + + + TGG G SR A++ + + N A Sbjct: 374 LG-----------ERYGYG-LGTGGYSYITGGGGMVFSRE-AVRRLLASKCRCYSNDA-- 418 Query: 285 IRLPDDCTIGYIVEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSY 334 PDD +G LG+P+ S LFH P L QV +S+ Sbjct: 419 ---PDDMVLGMCFSG-LGIPVTHSPLFHQ--ARPVDYPKDYLSHQVPISF 462 >gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens] Length = 802 Score = 48.9 bits (115), Expect = 7e-06 Identities = 78/335 (23%), Positives = 127/335 (37%), Gaps = 55/335 (16%) Query: 9 LLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALV 68 LL + G +LA LVL P +E R R A P G AAA+ G Sbjct: 13 LLGLVLGFVLASRLVL-------PRASELKRAGPRRRASPEGCRSGQ---AAASQAGGAR 62 Query: 69 RDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVKTTKKFHRA 128 D + PPG+ P DG PR +F+ V T +K+ + Sbjct: 63 GDARGAQLW-------------PPGSDP---DGGPRDR------NFLFVGVMTAQKYLQT 100 Query: 129 RLDLLLETWISRHK-EMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCKMA-VEYD 186 R TW ++ F ++G D ++ V + ++ Q S M +D Sbjct: 101 RAVAAYRTWSKTIPGKVQFFSSEGSDTSVPIPV--VPLRGVDDSYPPQKKSFMMLKYMHD 158 Query: 187 RFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERVSENKVR 246 +++ +WF DDD Y+ L L S + +++G+ L E + + + Sbjct: 159 HYLDK-YEWFMRADDDVYIKGDRLENFLRSLNSSEPLFLGQTGLG----TTEEMGKLALE 213 Query: 247 PVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEALLGVPLI 306 P F GG G +SR + +M P E +D +G V GV + Sbjct: 214 PGEN-FCMGGPGVIMSREVLRRMVPHIG----KCLREMYTTHEDVEVGRCVRRFAGVQCV 268 Query: 307 RS----GLFHSHLEN-----LQQVPTSELHEQVTL 332 S LF+ + E ++ + S++H+ +TL Sbjct: 269 WSYEMQQLFYENYEQNKKGYIRDLHNSKIHQAITL 303 >gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens] Length = 882 Score = 48.9 bits (115), Expect = 7e-06 Identities = 77/329 (23%), Positives = 118/329 (35%), Gaps = 48/329 (14%) Query: 29 PPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRDA 88 PPP RGR P GA PG AA P E RRD Sbjct: 106 PPPLQQRRRGRE-------PEGATGLPGAPAAEGEP----------EEEDGGAAGQRRDG 148 Query: 89 GPPPGAAPRPADGHPRPLAEPLAPRD-VFIAVKTTKKFHRARLDLLLETWISRHKEMTFI 147 P + G A PRD +++ V T +K+ +R TW Sbjct: 149 RP---GSSHNGSGDGGAAAPSARPRDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEF 205 Query: 148 FTDGEDEALARHTGNVVITNCSAAHSRQALSCK--MAVEY--DRFIESGRKWFCHVDDDN 203 F+ + + + + K M ++Y D +++ +WF DDD Sbjct: 206 FSSQQPPNAGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMHDHYLDK-YEWFMRADDDV 264 Query: 204 YVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERVSENKVRPVHFWFATGGAGFCISR 263 Y+ L L S ++ +Y+G+ L +E + + + P F GG G SR Sbjct: 265 YIKGDKLEEFLRSLNSSKPLYLGQTGLGN----IEELGKLGLEPGEN-FCMGGPGMIFSR 319 Query: 264 GLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEALLGVPLIRS----GLFHSHLEN-- 317 + +M P G + E +D +G V G + S LFH + E+ Sbjct: 320 EVLRRMVPHI--GECLR--EMYTTHEDVEVGRCVRRFGGTQCVWSYEMQQLFHENYEHNR 375 Query: 318 ---LQQVPTSELHEQVTLSYGMFENKRNA 343 +Q + S++H +TL NKR A Sbjct: 376 KGYIQDLHNSKIHAAITL----HPNKRPA 400 >gi|148806884 AKT1 substrate 1 (proline-rich) [Homo sapiens] Length = 256 Score = 42.0 bits (97), Expect = 9e-04 Identities = 32/85 (37%), Positives = 37/85 (43%), Gaps = 16/85 (18%) Query: 21 LLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSL 80 L++LTA PPPPP P GP A A G GA A A R +H ++ Sbjct: 28 LVLLTAAPPPPPRP------------GPCAYA-AHGRGALAEAAR---RCLHDIALAHRA 71 Query: 81 LTRARRDAGPPPGAAPRPADGHPRP 105 T AR A PP P P PRP Sbjct: 72 ATAARPPAPPPAPQPPSPTPSPPRP 96 >gi|148806906 AKT1 substrate 1 (proline-rich) [Homo sapiens] Length = 256 Score = 42.0 bits (97), Expect = 9e-04 Identities = 32/85 (37%), Positives = 37/85 (43%), Gaps = 16/85 (18%) Query: 21 LLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSL 80 L++LTA PPPPP P GP A A G GA A A R +H ++ Sbjct: 28 LVLLTAAPPPPPRP------------GPCAYA-AHGRGALAEAAR---RCLHDIALAHRA 71 Query: 81 LTRARRDAGPPPGAAPRPADGHPRP 105 T AR A PP P P PRP Sbjct: 72 ATAARPPAPPPAPQPPSPTPSPPRP 96 >gi|148806896 AKT1 substrate 1 (proline-rich) [Homo sapiens] Length = 256 Score = 42.0 bits (97), Expect = 9e-04 Identities = 32/85 (37%), Positives = 37/85 (43%), Gaps = 16/85 (18%) Query: 21 LLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSL 80 L++LTA PPPPP P GP A A G GA A A R +H ++ Sbjct: 28 LVLLTAAPPPPPRP------------GPCAYA-AHGRGALAEAAR---RCLHDIALAHRA 71 Query: 81 LTRARRDAGPPPGAAPRPADGHPRP 105 T AR A PP P P PRP Sbjct: 72 ATAARPPAPPPAPQPPSPTPSPPRP 96 >gi|4758392 forkhead box D1 [Homo sapiens] Length = 465 Score = 41.6 bits (96), Expect = 0.001 Identities = 40/113 (35%), Positives = 43/113 (38%), Gaps = 9/113 (7%) Query: 9 LLLALAGALLACLLVLTADPPPPP---LPAERGRRALRSLAGPAGAA---PAPGLGAAAA 62 L A A A A + PPPPP AE R A P GAA P P A A Sbjct: 291 LFAAAAAAAAAAAFHPHSPPPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAG 350 Query: 63 APG--ALVRDVHSLSEYF-SLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112 PG AL R S+ L A A AA A P P+A P AP Sbjct: 351 GPGASALARSPFSIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAP 403 >gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta) [Homo sapiens] Length = 728 Score = 40.8 bits (94), Expect = 0.002 Identities = 42/120 (35%), Positives = 47/120 (39%), Gaps = 22/120 (18%) Query: 12 ALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAP---------------- 55 ALA + + LL L A P AE RRALR AGP G A P Sbjct: 169 ALADGIKSFLLALPAPLVTPEASAE-ARRALREAAGPVGPALEPPTLPLHRALTLRFLLQ 227 Query: 56 GLGAAAAAPGALVRDVHSLSEYFS--LLTRARRDAGPPPGAAP---RPADGHPRPLAEPL 110 LG A AL V +L F LL + PPPG AP P+ P L E L Sbjct: 228 HLGRVARRAPALGPAVRALGATFGPLLLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKL 287 >gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] Length = 538 Score = 40.8 bits (94), Expect = 0.002 Identities = 35/91 (38%), Positives = 39/91 (42%), Gaps = 25/91 (27%) Query: 25 TADPPPPPLP--AERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLT 82 T PPPPP P A RA R+ A A A P+PG A PG Sbjct: 130 TPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPG----PAQPG----------------P 169 Query: 83 RARRDAGPPPGAAPRPADGHPRPLAEPLAPR 113 RA+R A P AAP PA P +A P PR Sbjct: 170 RAQRAA---PLAAPPPAPAAPPAVAPPAGPR 197 Score = 34.3 bits (77), Expect = 0.18 Identities = 29/89 (32%), Positives = 32/89 (35%), Gaps = 12/89 (13%) Query: 26 ADPPPPPLPAERGRRALRS--LAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTR 83 A PP P PA+ G RA R+ LA P A AP A A P Sbjct: 156 ATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPA----------VA 205 Query: 84 ARRDAGPPPGAAPRPADGHPRPLAEPLAP 112 AR PPP P P P +P P Sbjct: 206 AREPPLPPPPQPPAPPQQQQPPPPQPQPP 234 >gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo sapiens] Length = 261 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 17 LLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPG 65 L+ L++ T P PPP A R RR AG GAAPAP G+ A PG Sbjct: 168 LMLMLMLPTLQPLPPPGSARRPRRGR---AGRGGAAPAPPTGSMRAGPG 213 >gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo sapiens] Length = 261 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 17 LLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPG 65 L+ L++ T P PPP A R RR AG GAAPAP G+ A PG Sbjct: 168 LMLMLMLPTLQPLPPPGSARRPRRGR---AGRGGAAPAPPTGSMRAGPG 213 >gi|85815829 SH3-domain binding protein 1 [Homo sapiens] Length = 701 Score = 39.3 bits (90), Expect = 0.006 Identities = 38/111 (34%), Positives = 46/111 (41%), Gaps = 21/111 (18%) Query: 13 LAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVH 72 L G+ L V PP PP PA R R RS A P+ A+P P A+P + Sbjct: 609 LVGSSLRAPTVPPPLPPTPPQPARRQSR--RSPASPSPASPGP------ASPSPV----- 655 Query: 73 SLSEYFSLLTRARRDAG--PPPGAAPRPADGHPRPLAEPLAPRDVFIAVKT 121 SL A+ D G G AP G P P A P PR +A +T Sbjct: 656 ------SLSNPAQVDLGAATAEGGAPEAISGVPTPPAIPPQPRPRSLASET 700 >gi|54873602 hypothetical protein LOC220382 [Homo sapiens] Length = 426 Score = 38.1 bits (87), Expect = 0.012 Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 7/89 (7%) Query: 20 CLLVLTADPPPPPLPAERGRRALRSLAGPAG---AAPAPGLGA----AAAAPGALVRDVH 72 C ++ A PP PP P+ A R LA P+ AAPA G A A+ A A Sbjct: 104 CSGLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSR 163 Query: 73 SLSEYFSLLTRARRDAGPPPGAAPRPADG 101 SL+ F L A P G PA G Sbjct: 164 SLAALFDSLRHVPGGAEPAGGEVAAPAAG 192 >gi|12751477 forkhead box L2 [Homo sapiens] Length = 376 Score = 37.7 bits (86), Expect = 0.016 Identities = 30/91 (32%), Positives = 35/91 (38%), Gaps = 9/91 (9%) Query: 29 PPPPLPAERGRRALRSLAGPAGAAPA-PGLGAAAAAPGALVRDVHSLSEYFSLLTRAR-- 85 PP P+P + A + A A AA A PG AAA L S Y + + A Sbjct: 209 PPSPMPYASCQMAAAAAAAAAAAAAAGPGSPGAAAVVKGLAGPAASYGPYTRVQSMALPP 268 Query: 86 ------RDAGPPPGAAPRPADGHPRPLAEPL 110 G PP A P P HP P A L Sbjct: 269 GVVNSYNGLGGPPAAPPPPPHPHPHPHAHHL 299 Score = 28.5 bits (62), Expect = 9.8 Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 17/77 (22%) Query: 26 ADPPPPPLPAERGR-RALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRA 84 A PPPPP P L + A P A P GAAA PG L+ A Sbjct: 282 AAPPPPPHPHPHPHAHHLHAAAAPPPAPPHH--GAAAPPPGQ--------------LSPA 325 Query: 85 RRDAGPPPGAAPRPADG 101 PP AP A G Sbjct: 326 SPATAAPPAPAPTSAPG 342 >gi|110832843 TBP-associated factor 4 [Homo sapiens] Length = 1085 Score = 37.7 bits (86), Expect = 0.016 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 11/98 (11%) Query: 25 TADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFS----- 79 +A P P PA G + GP AA AP G A +P +V+ ++ + Sbjct: 308 SAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPA 367 Query: 80 ------LLTRARRDAGPPPGAAPRPADGHPRPLAEPLA 111 ++ + A P P A P PA G P L + A Sbjct: 368 STAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAA 405 Score = 34.3 bits (77), Expect = 0.18 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Query: 28 PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRD 87 P P PA + R AG AP P A AA P + +L RA Sbjct: 116 PAGPAPPAAKLRPPPEGSAG--SCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPG 173 Query: 88 AGPPPGAAPRPADGHP 103 GP PG P P G P Sbjct: 174 PGPGPGPGPGPGPGKP 189 Score = 32.3 bits (72), Expect = 0.68 Identities = 25/77 (32%), Positives = 27/77 (35%), Gaps = 15/77 (19%) Query: 29 PPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRDA 88 PPP A + A AG PAP A A P AL AR Sbjct: 128 PPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALA---------------ARAGP 172 Query: 89 GPPPGAAPRPADGHPRP 105 GP PG P P G +P Sbjct: 173 GPGPGPGPGPGPGPGKP 189 Score = 30.0 bits (66), Expect = 3.4 Identities = 38/121 (31%), Positives = 45/121 (37%), Gaps = 31/121 (25%) Query: 19 ACLLVLTADPPPPPLPAE-RGRRALRSLAGPAGAAPAPGLG-----AAAAAPG------- 65 A V P P PA+ G AL + AGP G P PG G A PG Sbjct: 142 AAAAVAAGPEPAPAGPAKPAGPAALAARAGP-GPGPGPGPGPGPGPGKPAGPGAAQTLNG 200 Query: 66 --ALVRDVHSLSEYFSLLTRA-------RRDAGP------PP--GAAPRPADGHPRPLAE 108 AL+ H+ + SL+ + A P PP GAA PA P P A Sbjct: 201 SAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAA 260 Query: 109 P 109 P Sbjct: 261 P 261 Score = 29.6 bits (65), Expect = 4.4 Identities = 32/94 (34%), Positives = 35/94 (37%), Gaps = 33/94 (35%) Query: 30 PPPLPAERGRRA-----LRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRA 84 P P PA G + + A PA AAP+P A AAP A Sbjct: 227 PLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAA------------------ 268 Query: 85 RRDAGPPPGAAP----RPADGHPR--PLAEPLAP 112 A PPP AP RP GHP P A P P Sbjct: 269 ---APPPPPPAPATLARP-PGHPAGPPTAAPAVP 298 >gi|5454106 TBP-related factor 10 [Homo sapiens] Length = 218 Score = 37.7 bits (86), Expect = 0.016 Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 10/92 (10%) Query: 25 TADPPPPPLPAERG---RRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLL 81 +A P PP+ A A + A PAG A PG GAAA G L +E Sbjct: 19 SAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAERRGAA 78 Query: 82 TRARRDAGPPPGA-------APRPADGHPRPL 106 + A PP GA P A+G +P+ Sbjct: 79 PVSAGGAAPPEGAISNGVYVLPSAANGDVKPV 110 >gi|39812378 RAN binding protein 9 [Homo sapiens] Length = 729 Score = 37.0 bits (84), Expect = 0.027 Identities = 36/122 (29%), Positives = 45/122 (36%), Gaps = 27/122 (22%) Query: 15 GALLACLLV--------LTADPPPPPLPAERGRRA------------LRSLAGPAGAAPA 54 GA A LL+ TA PPPPP P A L + GPAG AP Sbjct: 61 GAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPT 120 Query: 55 PGLGAAAAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRD 114 P L A ++A +L+E L R + P D PL +P+D Sbjct: 121 PALVAGSSAAAPFPHGDSALNEQEKELQRRLKRLYP-------AVDEQETPLPRSWSPKD 173 Query: 115 VF 116 F Sbjct: 174 KF 175 Score = 31.2 bits (69), Expect = 1.5 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 13/100 (13%) Query: 24 LTADPPPPPLPAERGRRALRSLAGPAGAAPAPGL-----------GAAAAAPGALVRDVH 72 ++ PPPPP P ++ ++ S PA AP G+ + A +PG Sbjct: 1 MSGQPPPPP-PQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGGAGG-E 58 Query: 73 SLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112 L + L PP AAP P P P A AP Sbjct: 59 GLGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAP 98 >gi|119508426 alpha 3 type IX collagen [Homo sapiens] Length = 684 Score = 36.6 bits (83), Expect = 0.036 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query: 3 KRCGRRLLLALAGALLACL----LVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLG 58 + C LLL L G LLA + L P PP P + G+ + AGP G PG Sbjct: 5 RACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPK 64 Query: 59 AAAAAPG 65 A PG Sbjct: 65 GAPGKPG 71 >gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sapiens] Length = 443 Score = 36.6 bits (83), Expect = 0.036 Identities = 47/153 (30%), Positives = 56/153 (36%), Gaps = 28/153 (18%) Query: 9 LLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALV 68 LLLALA LLA L + PP LPA R A P PG A PGA Sbjct: 11 LLLALAALLLALLSLRAGRAEPPALPARPASAPQRHPAPVPARWPGPG-----ALPGA-- 63 Query: 69 RDVHSLSEYFSLLTRARRDAGPPPGAAPRPA---------DGHPRPLAEPLAPR-DVFIA 118 S R RR P P A R A G PR L P + +A Sbjct: 64 ----------SPGVRRRRPPRPRPRAGRRGAARLEKLARRPGEPRSFQAVLPPELWIHLA 113 Query: 119 VKTTKKFHRARLDLLLETWISRHKEMTF-IFTD 150 V L +L + H+++ F IFT+ Sbjct: 114 VVACGNRLEETLVMLKSAVLFSHRKIQFHIFTE 146 >gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo sapiens] Length = 1650 Score = 36.2 bits (82), Expect = 0.047 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 15/103 (14%) Query: 28 PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRD 87 P P P ++G + +GP G PGL A GA A Sbjct: 1348 PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA---------------KGATGP 1392 Query: 88 AGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVKTTKKFHRARL 130 GP + GHP P E + P + + KT + +RL Sbjct: 1393 GGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRL 1435 Score = 33.9 bits (76), Expect = 0.23 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 12/97 (12%) Query: 24 LTADPPPPPLPAERGRRALRSLAGPAGAAPAPG--------LGAAAAAPGALVRDVHSLS 75 + +P P P ERG L G GA PG G+ G +V + + Sbjct: 329 IQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQA 388 Query: 76 EYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112 + ++L +AR PPG P G P PL +P +P Sbjct: 389 Q--AILQQARLALRGPPG--PMGYTGRPGPLGQPGSP 421 Score = 30.0 bits (66), Expect = 3.4 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 25 TADPPPPPLPAERGRRALRSL------AGPAGAAPAPGLGAAAAAPGA 66 T DP PP L E+G+ + L GP G+ PG A+ GA Sbjct: 694 TGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGA 741 >gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo sapiens] Length = 1629 Score = 36.2 bits (82), Expect = 0.047 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 15/103 (14%) Query: 28 PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRD 87 P P P ++G + +GP G PGL A GA A Sbjct: 1327 PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA---------------KGATGP 1371 Query: 88 AGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVKTTKKFHRARL 130 GP + GHP P E + P + + KT + +RL Sbjct: 1372 GGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRL 1414 Score = 33.9 bits (76), Expect = 0.23 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 12/97 (12%) Query: 24 LTADPPPPPLPAERGRRALRSLAGPAGAAPAPG--------LGAAAAAPGALVRDVHSLS 75 + +P P P ERG L G GA PG G+ G +V + + Sbjct: 308 IQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQA 367 Query: 76 EYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112 + ++L +AR PPG P G P PL +P +P Sbjct: 368 Q--AILQQARLALRGPPG--PMGYTGRPGPLGQPGSP 400 Score = 30.0 bits (66), Expect = 3.4 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 25 TADPPPPPLPAERGRRALRSL------AGPAGAAPAPGLGAAAAAPGA 66 T DP PP L E+G+ + L GP G+ PG A+ GA Sbjct: 673 TGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGA 720 >gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo sapiens] Length = 1736 Score = 36.2 bits (82), Expect = 0.047 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 15/103 (14%) Query: 28 PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRD 87 P P P ++G + +GP G PGL A GA A Sbjct: 1434 PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA---------------KGATGP 1478 Query: 88 AGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVKTTKKFHRARL 130 GP + GHP P E + P + + KT + +RL Sbjct: 1479 GGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRL 1521 Score = 33.9 bits (76), Expect = 0.23 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 12/97 (12%) Query: 24 LTADPPPPPLPAERGRRALRSLAGPAGAAPAPG--------LGAAAAAPGALVRDVHSLS 75 + +P P P ERG L G GA PG G+ G +V + + Sbjct: 415 IQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQA 474 Query: 76 EYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112 + ++L +AR PPG P G P PL +P +P Sbjct: 475 Q--AILQQARLALRGPPG--PMGYTGRPGPLGQPGSP 507 Score = 30.0 bits (66), Expect = 3.4 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 25 TADPPPPPLPAERGRRALRSL------AGPAGAAPAPGLGAAAAAPGA 66 T DP PP L E+G+ + L GP G+ PG A+ GA Sbjct: 780 TGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGA 827 >gi|21687188 hypothetical protein LOC146325 [Homo sapiens] Length = 571 Score = 36.2 bits (82), Expect = 0.047 Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 9/67 (13%) Query: 29 PPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRDA 88 P P P E A P GAAPAP L +V D+HSL +RA+ Sbjct: 88 PTPDRPGESDPGRQPQGARPTGAAPAPDL---------VVADIHSLHCGGGPKSRAKGSP 138 Query: 89 GPPPGAA 95 GPPP A Sbjct: 139 GPPPPVA 145 >gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] Length = 1178 Score = 36.2 bits (82), Expect = 0.047 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 8/62 (12%) Query: 28 PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAA--------PGALVRDVHSLSEYFS 79 PPPPP PA R L P G P GAAA A P A +R+ + E+F Sbjct: 44 PPPPPPPAGPSRGPLPPPPPPRGLGPPVAGGAAAGAGMPGGGGGPSAALREQERVYEWFG 103 Query: 80 LL 81 L+ Sbjct: 104 LV 105 >gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens] Length = 2161 Score = 36.2 bits (82), Expect = 0.047 Identities = 27/86 (31%), Positives = 36/86 (41%) Query: 24 LTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTR 83 LT PP P L + PA AA P L + A++ + +V +L++ S Sbjct: 1584 LTPGPPHPLPDTPAPATPLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGASAAPG 1643 Query: 84 ARRDAGPPPGAAPRPADGHPRPLAEP 109 GPP AAP PA P P P Sbjct: 1644 DPHPPGPPAPAAPAPAAPQPGPDPPP 1669 Score = 32.7 bits (73), Expect = 0.52 Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 19/86 (22%) Query: 29 PPPPLPAERGRRALRSLAGPAGAAPAPGLG--AAAAAPGALVRDVHSLSEYFSLLTRARR 86 PP PLP PA A P P + A AAAP L SL+ Y S + + Sbjct: 1588 PPHPLPDT-----------PAPATPLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQ 1636 Query: 87 DAGPPPGAAPRPADGHPRPLAEPLAP 112 GA+ P D HP P AP Sbjct: 1637 ------GASAAPGDPHPPGPPAPAAP 1656 >gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo sapiens] Length = 1691 Score = 35.8 bits (81), Expect = 0.061 Identities = 34/95 (35%), Positives = 41/95 (43%), Gaps = 17/95 (17%) Query: 27 DPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARR 86 DP P LP +G ++ L GP+G PGL A + PGAL + F L + Sbjct: 363 DPGVPGLPGLKGDEGIQGLRGPSGV---PGLPALSGVPGALG------PQGFPGL---KG 410 Query: 87 DAGPPP----GAAPRPA-DGHPRPLAEPLAPRDVF 116 D G P GAA P DG P P P P F Sbjct: 411 DQGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPEF 445 Score = 30.4 bits (67), Expect = 2.6 Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 24 LTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTR 83 + DP P L G + G G A PGL PG L D ++ F Sbjct: 170 MKGDPGLPGLDGITGPQGAPGFPGAVGPAGPPGLQGPPGPPGPLGPD-GNMGLGFQGEKG 228 Query: 84 ARRDAGPPPGAAPRPADG 101 + D G P A P P+ G Sbjct: 229 VKGDVGLPGPAGPPPSTG 246 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/38 (36%), Positives = 18/38 (47%) Query: 28 PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPG 65 P P L ++G R L GPAG APG+ + G Sbjct: 1219 PGKPGLRGQKGDRGFPGLQGPAGLPGAPGISLPSLIAG 1256 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.322 0.137 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,615,235 Number of Sequences: 37866 Number of extensions: 907538 Number of successful extensions: 9838 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 389 Number of HSP's that attempted gapping in prelim test: 7731 Number of HSP's gapped (non-prelim): 2286 length of query: 361 length of database: 18,247,518 effective HSP length: 104 effective length of query: 257 effective length of database: 14,309,454 effective search space: 3677529678 effective search space used: 3677529678 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.