Guide to the Human Genome
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Search of human proteins with 93141005

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|93141005 lunatic fringe isoform b [Homo sapiens]
         (361 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93141005 lunatic fringe isoform b [Homo sapiens]                   738   0.0  
gi|93140999 lunatic fringe isoform a [Homo sapiens]                   729   0.0  
gi|74271816 radical fringe [Homo sapiens]                             348   3e-96
gi|21536461 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransfer...   334   6e-92
gi|154689817 beta 1,3-galactosyltransferase-like [Homo sapiens]        64   2e-10
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]              49   7e-06
gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]              49   7e-06
gi|148806884 AKT1 substrate 1 (proline-rich) [Homo sapiens]            42   9e-04
gi|148806906 AKT1 substrate 1 (proline-rich) [Homo sapiens]            42   9e-04
gi|148806896 AKT1 substrate 1 (proline-rich) [Homo sapiens]            42   9e-04
gi|4758392 forkhead box D1 [Homo sapiens]                              42   0.001
gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta...    41   0.002
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     41   0.002
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ...    40   0.003
gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ...    40   0.003
gi|85815829 SH3-domain binding protein 1 [Homo sapiens]                39   0.006
gi|54873602 hypothetical protein LOC220382 [Homo sapiens]              38   0.012
gi|12751477 forkhead box L2 [Homo sapiens]                             38   0.016
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    38   0.016
gi|5454106 TBP-related factor 10 [Homo sapiens]                        38   0.016
gi|39812378 RAN binding protein 9 [Homo sapiens]                       37   0.027
gi|119508426 alpha 3 type IX collagen [Homo sapiens]                   37   0.036
gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap...    37   0.036
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    36   0.047
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    36   0.047
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    36   0.047
gi|21687188 hypothetical protein LOC146325 [Homo sapiens]              36   0.047
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]      36   0.047
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap...    36   0.047
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ...    36   0.061

>gi|93141005 lunatic fringe isoform b [Homo sapiens]
          Length = 361

 Score =  738 bits (1904), Expect = 0.0
 Identities = 361/361 (100%), Positives = 361/361 (100%)

Query: 1   MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA 60
           MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA
Sbjct: 1   MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA 60

Query: 61  AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK 120
           AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK
Sbjct: 61  AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK 120

Query: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK 180
           TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK
Sbjct: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK 180

Query: 181 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV 240
           MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV
Sbjct: 181 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV 240

Query: 241 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL 300
           SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL
Sbjct: 241 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL 300

Query: 301 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRWG 360
           LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRWG
Sbjct: 301 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRWG 360

Query: 361 N 361
           N
Sbjct: 361 N 361


>gi|93140999 lunatic fringe isoform a [Homo sapiens]
          Length = 379

 Score =  729 bits (1882), Expect = 0.0
 Identities = 358/359 (99%), Positives = 359/359 (100%)

Query: 1   MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA 60
           MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA
Sbjct: 1   MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA 60

Query: 61  AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK 120
           AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK
Sbjct: 61  AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK 120

Query: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK 180
           TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK
Sbjct: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK 180

Query: 181 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV 240
           MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV
Sbjct: 181 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV 240

Query: 241 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL 300
           SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL
Sbjct: 241 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL 300

Query: 301 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRW 359
           LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSR+
Sbjct: 301 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRF 359


>gi|74271816 radical fringe [Homo sapiens]
          Length = 331

 Score =  348 bits (894), Expect = 3e-96
 Identities = 185/303 (61%), Positives = 219/303 (72%), Gaps = 6/303 (1%)

Query: 63  APGALVRDVHSLSEYFS--LLTRARRDAGPPPGAAPRPADGHP--RPLAEPLAPRDVFIA 118
           A GAL R   +L+   +  LL        P P   P PA   P  RP A  L P DVFIA
Sbjct: 4   ARGALCRACLALAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLRPDDVFIA 63

Query: 119 VKTTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVI-TNCSAAHSRQAL 177
           VKTT+K H  RL LLL TWISR ++ TFIFTDG+D  L    G+ VI TNCSA  +RQAL
Sbjct: 64  VKTTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAVRTRQAL 123

Query: 178 SCKMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAM 237
            CKM+VEYD+FIESGRKWFCHVDDDNYVN R+LL LL+S+  ++DVY+G+PSLD PI+A 
Sbjct: 124 CCKMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPIEAT 183

Query: 238 ERVSENK-VRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYI 296
           ERV   + V  V FWFATGGAGFC+SRGLALKMSPWAS G FM+TAE++RLPDDCT+GYI
Sbjct: 184 ERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAEQVRLPDDCTVGYI 243

Query: 297 VEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADP 356
           VE LLG  L+ S LFHSHLENLQ++P   L +QVTLS+G  EN  N V+V G FS+  DP
Sbjct: 244 VEGLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLSHGGPENPHNVVNVAGGFSLHQDP 303

Query: 357 SRW 359
           +R+
Sbjct: 304 TRF 306


>gi|21536461 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
           [Homo sapiens]
          Length = 321

 Score =  334 bits (857), Expect = 6e-92
 Identities = 164/263 (62%), Positives = 197/263 (74%), Gaps = 1/263 (0%)

Query: 98  PADGHPRPLAEPLAPRDVFIAVKTTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALA 157
           P    P P    L   DVFIAVKTT+ FHR RL+LLL+TW+SR +E TF+FTD  D+ L 
Sbjct: 39  PELSQPNPGPPKLQLHDVFIAVKTTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQ 98

Query: 158 RHTGN-VVITNCSAAHSRQALSCKMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLAS 216
              G+ +V+TNCSA HS  ALSCKMA E+D F+ SG +WFCHVDDDNYVN RALL+LL +
Sbjct: 99  ERLGSHLVVTNCSAEHSHPALSCKMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRA 158

Query: 217 YPHTRDVYVGKPSLDRPIQAMERVSENKVRPVHFWFATGGAGFCISRGLALKMSPWASGG 276
           +P  RDVYVG+PSL+RPI A E    N+ R V FWFATGGAGFCI+R LALKM+PWASG 
Sbjct: 159 FPLARDVYVGRPSLNRPIHASEPQPHNRTRLVQFWFATGGAGFCINRKLALKMAPWASGS 218

Query: 277 HFMNTAERIRLPDDCTIGYIVEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGM 336
            FM+T+  IRLPDDCT+GYI+E  LG  L  S LFHSHLE LQ + T++L EQVTLSYG+
Sbjct: 219 RFMDTSALIRLPDDCTMGYIIECKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGV 278

Query: 337 FENKRNAVHVKGPFSVEADPSRW 359
           FE K N + ++GPFS E DPSR+
Sbjct: 279 FEGKLNVIKLQGPFSPEEDPSRF 301


>gi|154689817 beta 1,3-galactosyltransferase-like [Homo sapiens]
          Length = 498

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 32/230 (13%)

Query: 108 EPLAPRDVFIAVKTTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITN 167
           +P+  +D+F+AVKT KKFH  R+ ++ +TW S+   + + ++D  + ++   T ++ I N
Sbjct: 262 KPVKKKDIFVAVKTCKKFHGDRIPIVKQTWESQASLIEY-YSDYTENSIP--TVDLGIPN 318

Query: 168 CSAAHSRQALSCKMAVEYDRFIESGR---KWFCHVDDDNYVNLRALLRLLASYPHTRDVY 224
               H  +  +       +RF+   +    W   VDDD  +++  L  LL+ Y     V+
Sbjct: 319 TDRGHCGKTFAI-----LERFLNRSQDKTAWLVIVDDDTLISISRLQHLLSCYDSGEPVF 373

Query: 225 VGKPSLDRPIQAMERVSENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAER 284
           +G           ER     +    + + TGG G   SR  A++    +    + N A  
Sbjct: 374 LG-----------ERYGYG-LGTGGYSYITGGGGMVFSRE-AVRRLLASKCRCYSNDA-- 418

Query: 285 IRLPDDCTIGYIVEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSY 334
              PDD  +G      LG+P+  S LFH         P   L  QV +S+
Sbjct: 419 ---PDDMVLGMCFSG-LGIPVTHSPLFHQ--ARPVDYPKDYLSHQVPISF 462


>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
          Length = 802

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 78/335 (23%), Positives = 127/335 (37%), Gaps = 55/335 (16%)

Query: 9   LLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALV 68
           LL  + G +LA  LVL       P  +E  R   R  A P G        AAA+  G   
Sbjct: 13  LLGLVLGFVLASRLVL-------PRASELKRAGPRRRASPEGCRSGQ---AAASQAGGAR 62

Query: 69  RDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVKTTKKFHRA 128
            D      +             PPG+ P   DG PR          +F+ V T +K+ + 
Sbjct: 63  GDARGAQLW-------------PPGSDP---DGGPRDR------NFLFVGVMTAQKYLQT 100

Query: 129 RLDLLLETWISRHK-EMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCKMA-VEYD 186
           R      TW      ++ F  ++G D ++      V +     ++  Q  S  M    +D
Sbjct: 101 RAVAAYRTWSKTIPGKVQFFSSEGSDTSVPIPV--VPLRGVDDSYPPQKKSFMMLKYMHD 158

Query: 187 RFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERVSENKVR 246
            +++   +WF   DDD Y+    L   L S   +  +++G+  L       E + +  + 
Sbjct: 159 HYLDK-YEWFMRADDDVYIKGDRLENFLRSLNSSEPLFLGQTGLG----TTEEMGKLALE 213

Query: 247 PVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEALLGVPLI 306
           P    F  GG G  +SR +  +M P           E     +D  +G  V    GV  +
Sbjct: 214 PGEN-FCMGGPGVIMSREVLRRMVPHIG----KCLREMYTTHEDVEVGRCVRRFAGVQCV 268

Query: 307 RS----GLFHSHLEN-----LQQVPTSELHEQVTL 332
            S     LF+ + E      ++ +  S++H+ +TL
Sbjct: 269 WSYEMQQLFYENYEQNKKGYIRDLHNSKIHQAITL 303


>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
          Length = 882

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 77/329 (23%), Positives = 118/329 (35%), Gaps = 48/329 (14%)

Query: 29  PPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRDA 88
           PPP     RGR        P GA   PG  AA   P           E        RRD 
Sbjct: 106 PPPLQQRRRGRE-------PEGATGLPGAPAAEGEP----------EEEDGGAAGQRRDG 148

Query: 89  GPPPGAAPRPADGHPRPLAEPLAPRD-VFIAVKTTKKFHRARLDLLLETWISRHKEMTFI 147
            P    +     G     A    PRD +++ V T +K+  +R      TW          
Sbjct: 149 RP---GSSHNGSGDGGAAAPSARPRDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEF 205

Query: 148 FTDGEDEALARHTGNVVITNCSAAHSRQALSCK--MAVEY--DRFIESGRKWFCHVDDDN 203
           F+  +     +    + +              K  M ++Y  D +++   +WF   DDD 
Sbjct: 206 FSSQQPPNAGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMHDHYLDK-YEWFMRADDDV 264

Query: 204 YVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERVSENKVRPVHFWFATGGAGFCISR 263
           Y+    L   L S   ++ +Y+G+  L      +E + +  + P    F  GG G   SR
Sbjct: 265 YIKGDKLEEFLRSLNSSKPLYLGQTGLGN----IEELGKLGLEPGEN-FCMGGPGMIFSR 319

Query: 264 GLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEALLGVPLIRS----GLFHSHLEN-- 317
            +  +M P    G  +   E     +D  +G  V    G   + S     LFH + E+  
Sbjct: 320 EVLRRMVPHI--GECLR--EMYTTHEDVEVGRCVRRFGGTQCVWSYEMQQLFHENYEHNR 375

Query: 318 ---LQQVPTSELHEQVTLSYGMFENKRNA 343
              +Q +  S++H  +TL      NKR A
Sbjct: 376 KGYIQDLHNSKIHAAITL----HPNKRPA 400


>gi|148806884 AKT1 substrate 1 (proline-rich) [Homo sapiens]
          Length = 256

 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 32/85 (37%), Positives = 37/85 (43%), Gaps = 16/85 (18%)

Query: 21  LLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSL 80
           L++LTA PPPPP P            GP   A A G GA A A     R +H ++     
Sbjct: 28  LVLLTAAPPPPPRP------------GPCAYA-AHGRGALAEAAR---RCLHDIALAHRA 71

Query: 81  LTRARRDAGPPPGAAPRPADGHPRP 105
            T AR  A PP    P P    PRP
Sbjct: 72  ATAARPPAPPPAPQPPSPTPSPPRP 96


>gi|148806906 AKT1 substrate 1 (proline-rich) [Homo sapiens]
          Length = 256

 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 32/85 (37%), Positives = 37/85 (43%), Gaps = 16/85 (18%)

Query: 21  LLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSL 80
           L++LTA PPPPP P            GP   A A G GA A A     R +H ++     
Sbjct: 28  LVLLTAAPPPPPRP------------GPCAYA-AHGRGALAEAAR---RCLHDIALAHRA 71

Query: 81  LTRARRDAGPPPGAAPRPADGHPRP 105
            T AR  A PP    P P    PRP
Sbjct: 72  ATAARPPAPPPAPQPPSPTPSPPRP 96


>gi|148806896 AKT1 substrate 1 (proline-rich) [Homo sapiens]
          Length = 256

 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 32/85 (37%), Positives = 37/85 (43%), Gaps = 16/85 (18%)

Query: 21  LLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSL 80
           L++LTA PPPPP P            GP   A A G GA A A     R +H ++     
Sbjct: 28  LVLLTAAPPPPPRP------------GPCAYA-AHGRGALAEAAR---RCLHDIALAHRA 71

Query: 81  LTRARRDAGPPPGAAPRPADGHPRP 105
            T AR  A PP    P P    PRP
Sbjct: 72  ATAARPPAPPPAPQPPSPTPSPPRP 96


>gi|4758392 forkhead box D1 [Homo sapiens]
          Length = 465

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 40/113 (35%), Positives = 43/113 (38%), Gaps = 9/113 (7%)

Query: 9   LLLALAGALLACLLVLTADPPPPP---LPAERGRRALRSLAGPAGAA---PAPGLGAAAA 62
           L  A A A  A      + PPPPP     AE  R A      P GAA   P P   A A 
Sbjct: 291 LFAAAAAAAAAAAFHPHSPPPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAG 350

Query: 63  APG--ALVRDVHSLSEYF-SLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112
            PG  AL R   S+       L  A   A     AA   A   P P+A P AP
Sbjct: 351 GPGASALARSPFSIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAP 403


>gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta)
           [Homo sapiens]
          Length = 728

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 42/120 (35%), Positives = 47/120 (39%), Gaps = 22/120 (18%)

Query: 12  ALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAP---------------- 55
           ALA  + + LL L A    P   AE  RRALR  AGP G A  P                
Sbjct: 169 ALADGIKSFLLALPAPLVTPEASAE-ARRALREAAGPVGPALEPPTLPLHRALTLRFLLQ 227

Query: 56  GLGAAAAAPGALVRDVHSLSEYFS--LLTRARRDAGPPPGAAP---RPADGHPRPLAEPL 110
            LG  A    AL   V +L   F   LL      + PPPG AP    P+   P  L E L
Sbjct: 228 HLGRVARRAPALGPAVRALGATFGPLLLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKL 287


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 35/91 (38%), Positives = 39/91 (42%), Gaps = 25/91 (27%)

Query: 25  TADPPPPPLP--AERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLT 82
           T  PPPPP P  A    RA R+ A  A A P+PG     A PG                 
Sbjct: 130 TPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPG----PAQPG----------------P 169

Query: 83  RARRDAGPPPGAAPRPADGHPRPLAEPLAPR 113
           RA+R A   P AAP PA   P  +A P  PR
Sbjct: 170 RAQRAA---PLAAPPPAPAAPPAVAPPAGPR 197



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 29/89 (32%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 26  ADPPPPPLPAERGRRALRS--LAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTR 83
           A  PP P PA+ G RA R+  LA P  A  AP   A  A P                   
Sbjct: 156 ATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPA----------VA 205

Query: 84  ARRDAGPPPGAAPRPADGHPRPLAEPLAP 112
           AR    PPP   P P      P  +P  P
Sbjct: 206 AREPPLPPPPQPPAPPQQQQPPPPQPQPP 234


>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
           sapiens]
          Length = 261

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 17  LLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPG 65
           L+  L++ T  P PPP  A R RR     AG  GAAPAP  G+  A PG
Sbjct: 168 LMLMLMLPTLQPLPPPGSARRPRRGR---AGRGGAAPAPPTGSMRAGPG 213


>gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo
           sapiens]
          Length = 261

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 17  LLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPG 65
           L+  L++ T  P PPP  A R RR     AG  GAAPAP  G+  A PG
Sbjct: 168 LMLMLMLPTLQPLPPPGSARRPRRGR---AGRGGAAPAPPTGSMRAGPG 213


>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
          Length = 701

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 38/111 (34%), Positives = 46/111 (41%), Gaps = 21/111 (18%)

Query: 13  LAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVH 72
           L G+ L    V    PP PP PA R  R  RS A P+ A+P P      A+P  +     
Sbjct: 609 LVGSSLRAPTVPPPLPPTPPQPARRQSR--RSPASPSPASPGP------ASPSPV----- 655

Query: 73  SLSEYFSLLTRARRDAG--PPPGAAPRPADGHPRPLAEPLAPRDVFIAVKT 121
                 SL   A+ D G     G AP    G P P A P  PR   +A +T
Sbjct: 656 ------SLSNPAQVDLGAATAEGGAPEAISGVPTPPAIPPQPRPRSLASET 700


>gi|54873602 hypothetical protein LOC220382 [Homo sapiens]
          Length = 426

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 20  CLLVLTADPPPPPLPAERGRRALRSLAGPAG---AAPAPGLGA----AAAAPGALVRDVH 72
           C  ++ A PP PP P+     A R LA P+    AAPA G  A    A+ A  A      
Sbjct: 104 CSGLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSR 163

Query: 73  SLSEYFSLLTRARRDAGPPPGAAPRPADG 101
           SL+  F  L      A P  G    PA G
Sbjct: 164 SLAALFDSLRHVPGGAEPAGGEVAAPAAG 192


>gi|12751477 forkhead box L2 [Homo sapiens]
          Length = 376

 Score = 37.7 bits (86), Expect = 0.016
 Identities = 30/91 (32%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 29  PPPPLPAERGRRALRSLAGPAGAAPA-PGLGAAAAAPGALVRDVHSLSEYFSLLTRAR-- 85
           PP P+P    + A  + A  A AA A PG   AAA    L     S   Y  + + A   
Sbjct: 209 PPSPMPYASCQMAAAAAAAAAAAAAAGPGSPGAAAVVKGLAGPAASYGPYTRVQSMALPP 268

Query: 86  ------RDAGPPPGAAPRPADGHPRPLAEPL 110
                    G PP A P P   HP P A  L
Sbjct: 269 GVVNSYNGLGGPPAAPPPPPHPHPHPHAHHL 299



 Score = 28.5 bits (62), Expect = 9.8
 Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 17/77 (22%)

Query: 26  ADPPPPPLPAERGR-RALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRA 84
           A PPPPP P        L + A P  A P    GAAA  PG               L+ A
Sbjct: 282 AAPPPPPHPHPHPHAHHLHAAAAPPPAPPHH--GAAAPPPGQ--------------LSPA 325

Query: 85  RRDAGPPPGAAPRPADG 101
                 PP  AP  A G
Sbjct: 326 SPATAAPPAPAPTSAPG 342


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 37.7 bits (86), Expect = 0.016
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 25  TADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFS----- 79
           +A   P P PA  G   +    GP  AA AP  G  A +P  +V+     ++  +     
Sbjct: 308 SAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPA 367

Query: 80  ------LLTRARRDAGPPPGAAPRPADGHPRPLAEPLA 111
                 ++    + A P P A P PA G P  L +  A
Sbjct: 368 STAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAA 405



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 28  PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRD 87
           P  P  PA + R      AG    AP P   A AA P          +   +L  RA   
Sbjct: 116 PAGPAPPAAKLRPPPEGSAG--SCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPG 173

Query: 88  AGPPPGAAPRPADGHP 103
            GP PG  P P  G P
Sbjct: 174 PGPGPGPGPGPGPGKP 189



 Score = 32.3 bits (72), Expect = 0.68
 Identities = 25/77 (32%), Positives = 27/77 (35%), Gaps = 15/77 (19%)

Query: 29  PPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRDA 88
           PPP   A        + A  AG  PAP   A  A P AL                AR   
Sbjct: 128 PPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALA---------------ARAGP 172

Query: 89  GPPPGAAPRPADGHPRP 105
           GP PG  P P  G  +P
Sbjct: 173 GPGPGPGPGPGPGPGKP 189



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 38/121 (31%), Positives = 45/121 (37%), Gaps = 31/121 (25%)

Query: 19  ACLLVLTADPPPPPLPAE-RGRRALRSLAGPAGAAPAPGLG-----AAAAAPG------- 65
           A   V     P P  PA+  G  AL + AGP G  P PG G        A PG       
Sbjct: 142 AAAAVAAGPEPAPAGPAKPAGPAALAARAGP-GPGPGPGPGPGPGPGKPAGPGAAQTLNG 200

Query: 66  --ALVRDVHSLSEYFSLLTRA-------RRDAGP------PP--GAAPRPADGHPRPLAE 108
             AL+   H+ +   SL+           + A P      PP  GAA  PA   P P A 
Sbjct: 201 SAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAA 260

Query: 109 P 109
           P
Sbjct: 261 P 261



 Score = 29.6 bits (65), Expect = 4.4
 Identities = 32/94 (34%), Positives = 35/94 (37%), Gaps = 33/94 (35%)

Query: 30  PPPLPAERGRRA-----LRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRA 84
           P P PA  G        + + A PA AAP+P    A AAP A                  
Sbjct: 227 PLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAA------------------ 268

Query: 85  RRDAGPPPGAAP----RPADGHPR--PLAEPLAP 112
              A PPP  AP    RP  GHP   P A P  P
Sbjct: 269 ---APPPPPPAPATLARP-PGHPAGPPTAAPAVP 298


>gi|5454106 TBP-related factor 10 [Homo sapiens]
          Length = 218

 Score = 37.7 bits (86), Expect = 0.016
 Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 25  TADPPPPPLPAERG---RRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLL 81
           +A  P PP+ A        A  + A PAG A  PG GAAA   G L       +E     
Sbjct: 19  SAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAERRGAA 78

Query: 82  TRARRDAGPPPGA-------APRPADGHPRPL 106
             +   A PP GA        P  A+G  +P+
Sbjct: 79  PVSAGGAAPPEGAISNGVYVLPSAANGDVKPV 110


>gi|39812378 RAN binding protein 9 [Homo sapiens]
          Length = 729

 Score = 37.0 bits (84), Expect = 0.027
 Identities = 36/122 (29%), Positives = 45/122 (36%), Gaps = 27/122 (22%)

Query: 15  GALLACLLV--------LTADPPPPPLPAERGRRA------------LRSLAGPAGAAPA 54
           GA  A LL+         TA PPPPP P      A            L +  GPAG AP 
Sbjct: 61  GAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPT 120

Query: 55  PGLGAAAAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRD 114
           P L A ++A         +L+E    L R  +   P         D    PL    +P+D
Sbjct: 121 PALVAGSSAAAPFPHGDSALNEQEKELQRRLKRLYP-------AVDEQETPLPRSWSPKD 173

Query: 115 VF 116
            F
Sbjct: 174 KF 175



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 24  LTADPPPPPLPAERGRRALRSLAGPAGAAPAPGL-----------GAAAAAPGALVRDVH 72
           ++  PPPPP P ++ ++   S   PA  AP  G+            + A +PG       
Sbjct: 1   MSGQPPPPP-PQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGGAGG-E 58

Query: 73  SLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112
            L    + L        PP  AAP P    P P A   AP
Sbjct: 59  GLGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAP 98


>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
          Length = 684

 Score = 36.6 bits (83), Expect = 0.036
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 3  KRCGRRLLLALAGALLACL----LVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLG 58
          + C   LLL L G LLA      + L   P PP  P + G+  +   AGP G    PG  
Sbjct: 5  RACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPK 64

Query: 59 AAAAAPG 65
           A   PG
Sbjct: 65 GAPGKPG 71


>gi|122937187 glycosyltransferase 8 domain containing 4 [Homo
           sapiens]
          Length = 443

 Score = 36.6 bits (83), Expect = 0.036
 Identities = 47/153 (30%), Positives = 56/153 (36%), Gaps = 28/153 (18%)

Query: 9   LLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALV 68
           LLLALA  LLA L +      PP LPA       R  A      P PG     A PGA  
Sbjct: 11  LLLALAALLLALLSLRAGRAEPPALPARPASAPQRHPAPVPARWPGPG-----ALPGA-- 63

Query: 69  RDVHSLSEYFSLLTRARRDAGPPPGAAPRPA---------DGHPRPLAEPLAPR-DVFIA 118
                     S   R RR   P P A  R A          G PR     L P   + +A
Sbjct: 64  ----------SPGVRRRRPPRPRPRAGRRGAARLEKLARRPGEPRSFQAVLPPELWIHLA 113

Query: 119 VKTTKKFHRARLDLLLETWISRHKEMTF-IFTD 150
           V          L +L    +  H+++ F IFT+
Sbjct: 114 VVACGNRLEETLVMLKSAVLFSHRKIQFHIFTE 146


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
            sapiens]
          Length = 1650

 Score = 36.2 bits (82), Expect = 0.047
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 15/103 (14%)

Query: 28   PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRD 87
            P P   P ++G   +   +GP G    PGL   A   GA                 A   
Sbjct: 1348 PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA---------------KGATGP 1392

Query: 88   AGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVKTTKKFHRARL 130
             GP      +   GHP P  E + P  + +  KT +    +RL
Sbjct: 1393 GGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRL 1435



 Score = 33.9 bits (76), Expect = 0.23
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 24  LTADPPPPPLPAERGRRALRSLAGPAGAAPAPG--------LGAAAAAPGALVRDVHSLS 75
           +  +P P   P ERG      L G  GA   PG         G+     G +V    + +
Sbjct: 329 IQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQA 388

Query: 76  EYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112
           +  ++L +AR     PPG  P    G P PL +P +P
Sbjct: 389 Q--AILQQARLALRGPPG--PMGYTGRPGPLGQPGSP 421



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 25  TADPPPPPLPAERGRRALRSL------AGPAGAAPAPGLGAAAAAPGA 66
           T DP PP L  E+G+  +  L       GP G+   PG   A+   GA
Sbjct: 694 TGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGA 741


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
            sapiens]
          Length = 1629

 Score = 36.2 bits (82), Expect = 0.047
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 15/103 (14%)

Query: 28   PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRD 87
            P P   P ++G   +   +GP G    PGL   A   GA                 A   
Sbjct: 1327 PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA---------------KGATGP 1371

Query: 88   AGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVKTTKKFHRARL 130
             GP      +   GHP P  E + P  + +  KT +    +RL
Sbjct: 1372 GGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRL 1414



 Score = 33.9 bits (76), Expect = 0.23
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 24  LTADPPPPPLPAERGRRALRSLAGPAGAAPAPG--------LGAAAAAPGALVRDVHSLS 75
           +  +P P   P ERG      L G  GA   PG         G+     G +V    + +
Sbjct: 308 IQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQA 367

Query: 76  EYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112
           +  ++L +AR     PPG  P    G P PL +P +P
Sbjct: 368 Q--AILQQARLALRGPPG--PMGYTGRPGPLGQPGSP 400



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 25  TADPPPPPLPAERGRRALRSL------AGPAGAAPAPGLGAAAAAPGA 66
           T DP PP L  E+G+  +  L       GP G+   PG   A+   GA
Sbjct: 673 TGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGA 720


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 36.2 bits (82), Expect = 0.047
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 15/103 (14%)

Query: 28   PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRD 87
            P P   P ++G   +   +GP G    PGL   A   GA                 A   
Sbjct: 1434 PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA---------------KGATGP 1478

Query: 88   AGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVKTTKKFHRARL 130
             GP      +   GHP P  E + P  + +  KT +    +RL
Sbjct: 1479 GGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRL 1521



 Score = 33.9 bits (76), Expect = 0.23
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 24  LTADPPPPPLPAERGRRALRSLAGPAGAAPAPG--------LGAAAAAPGALVRDVHSLS 75
           +  +P P   P ERG      L G  GA   PG         G+     G +V    + +
Sbjct: 415 IQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQA 474

Query: 76  EYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112
           +  ++L +AR     PPG  P    G P PL +P +P
Sbjct: 475 Q--AILQQARLALRGPPG--PMGYTGRPGPLGQPGSP 507



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 25  TADPPPPPLPAERGRRALRSL------AGPAGAAPAPGLGAAAAAPGA 66
           T DP PP L  E+G+  +  L       GP G+   PG   A+   GA
Sbjct: 780 TGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGA 827


>gi|21687188 hypothetical protein LOC146325 [Homo sapiens]
          Length = 571

 Score = 36.2 bits (82), Expect = 0.047
 Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 29  PPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRDA 88
           P P  P E         A P GAAPAP L         +V D+HSL       +RA+   
Sbjct: 88  PTPDRPGESDPGRQPQGARPTGAAPAPDL---------VVADIHSLHCGGGPKSRAKGSP 138

Query: 89  GPPPGAA 95
           GPPP  A
Sbjct: 139 GPPPPVA 145


>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
          Length = 1178

 Score = 36.2 bits (82), Expect = 0.047
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 28  PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAA--------PGALVRDVHSLSEYFS 79
           PPPPP PA   R  L     P G  P    GAAA A        P A +R+   + E+F 
Sbjct: 44  PPPPPPPAGPSRGPLPPPPPPRGLGPPVAGGAAAGAGMPGGGGGPSAALREQERVYEWFG 103

Query: 80  LL 81
           L+
Sbjct: 104 LV 105


>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
          Length = 2161

 Score = 36.2 bits (82), Expect = 0.047
 Identities = 27/86 (31%), Positives = 36/86 (41%)

Query: 24   LTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTR 83
            LT  PP P          L  +  PA AA  P L + A++  +   +V +L++  S    
Sbjct: 1584 LTPGPPHPLPDTPAPATPLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGASAAPG 1643

Query: 84   ARRDAGPPPGAAPRPADGHPRPLAEP 109
                 GPP  AAP PA   P P   P
Sbjct: 1644 DPHPPGPPAPAAPAPAAPQPGPDPPP 1669



 Score = 32.7 bits (73), Expect = 0.52
 Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 19/86 (22%)

Query: 29   PPPPLPAERGRRALRSLAGPAGAAPAPGLG--AAAAAPGALVRDVHSLSEYFSLLTRARR 86
            PP PLP             PA A P P +   A AAAP  L     SL+ Y S +    +
Sbjct: 1588 PPHPLPDT-----------PAPATPLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQ 1636

Query: 87   DAGPPPGAAPRPADGHPRPLAEPLAP 112
                  GA+  P D HP     P AP
Sbjct: 1637 ------GASAAPGDPHPPGPPAPAAP 1656


>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
           sapiens]
          Length = 1691

 Score = 35.8 bits (81), Expect = 0.061
 Identities = 34/95 (35%), Positives = 41/95 (43%), Gaps = 17/95 (17%)

Query: 27  DPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARR 86
           DP  P LP  +G   ++ L GP+G    PGL A +  PGAL        + F  L   + 
Sbjct: 363 DPGVPGLPGLKGDEGIQGLRGPSGV---PGLPALSGVPGALG------PQGFPGL---KG 410

Query: 87  DAGPPP----GAAPRPA-DGHPRPLAEPLAPRDVF 116
           D G P     GAA  P  DG P P   P  P   F
Sbjct: 411 DQGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPEF 445



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 24  LTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTR 83
           +  DP  P L    G +      G  G A  PGL      PG L  D  ++   F     
Sbjct: 170 MKGDPGLPGLDGITGPQGAPGFPGAVGPAGPPGLQGPPGPPGPLGPD-GNMGLGFQGEKG 228

Query: 84  ARRDAGPPPGAAPRPADG 101
            + D G P  A P P+ G
Sbjct: 229 VKGDVGLPGPAGPPPSTG 246



 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 28   PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPG 65
            P  P L  ++G R    L GPAG   APG+   +   G
Sbjct: 1219 PGKPGLRGQKGDRGFPGLQGPAGLPGAPGISLPSLIAG 1256


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,615,235
Number of Sequences: 37866
Number of extensions: 907538
Number of successful extensions: 9838
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 389
Number of HSP's that attempted gapping in prelim test: 7731
Number of HSP's gapped (non-prelim): 2286
length of query: 361
length of database: 18,247,518
effective HSP length: 104
effective length of query: 257
effective length of database: 14,309,454
effective search space: 3677529678
effective search space used: 3677529678
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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