Guide to the Human Genome
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Name: LFNG Sequence: fasta or formatted (361aa) NCBI GI: 93141005
Description:

lunatic fringe isoform b

Referenced in:

Protein Glycosylation
Notch Pathway
Stem Cells and Early Development

Other entries for this name:
alt prot [379aa] lunatic fringe isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         44           5
 C cysteine            1.9          7           1
 D aspartate           4.7         17           3
 E glutamate           5.0         18           1
 F phenylalanine       3.9         14           1
 G glycine             7.5         27           2
 H histidine           3.9         14           1
 I isoleucine          3.0         11           1
 K lysine              3.3         12           2
 L leucine            11.9         43           3
 M methionine          1.9          7           1
 N asparagine          2.8         10           1
 P proline             8.0         29           5
 Q glutamine           1.4          5           2
 R arginine            9.1         33           2
 S serine              5.8         21           1
 T threonine           4.2         15           2
 V valine              6.1         22           2
 W tryptophan          1.4          5           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lunatic fringe isoform b 
LFNG                  0.987   lunatic fringe isoform a 
RFNG                  0.453   radical fringe 
MFNG                  0.433   O-fucosylpeptide 3-beta-N-acetylglucosaminyltransfer...
B3GALTL               0.055   beta 1,3-galactosyltransferase-like 
CHSY1                 0.034   chondroitin sulfate synthase 1 
CHSY3                 0.034   chondroitin sulfate synthase 3 
AKT1S1                0.024   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.024   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.024   AKT1 substrate 1 (proline-rich) 
FOXD1                 0.024   forkhead box D1 
PIK3R2                0.022   phosphoinositide-3-kinase, regulatory subunit 2 (beta...
SAMD1                 0.022   sterile alpha motif domain containing 1 
LOC100291220          0.021   PREDICTED: hypothetical protein XP_002347633 
LOC100287224          0.021   PREDICTED: hypothetical protein XP_002343483 
SH3BP1                0.020   SH3-domain binding protein 1 
FAM181B               0.018   hypothetical protein LOC220382 
FOXL2                 0.018   forkhead box L2 
TAF4                  0.018   TBP-associated factor 4 
TAF10                 0.018   TBP-related factor 10 
RANBP9                0.017   RAN binding protein 9 
COL9A3                0.017   alpha 3 type IX collagen 
GLT8D4                0.017   glycosyltransferase 8 domain containing 4 
COL11A2               0.015   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.015   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.015   collagen, type XI, alpha 2 isoform 1 preproprotein ...
C16orf11              0.015   hypothetical protein LOC146325 
ZCCHC2                0.015   zinc finger, CCHC domain containing 2 
SHANK1                0.015   SH3 and multiple ankyrin repeat domains 1 
COL4A6                0.015   type IV alpha 6 collagen isoform A precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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