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Search of human proteins with 93140999
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|93140999 lunatic fringe isoform a [Homo sapiens]
(379 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|93140999 lunatic fringe isoform a [Homo sapiens] 779 0.0
gi|93141005 lunatic fringe isoform b [Homo sapiens] 729 0.0
gi|74271816 radical fringe [Homo sapiens] 383 e-106
gi|21536461 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransfer... 370 e-103
gi|154689817 beta 1,3-galactosyltransferase-like [Homo sapiens] 64 2e-10
gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens] 50 3e-06
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens] 49 7e-06
gi|148806884 AKT1 substrate 1 (proline-rich) [Homo sapiens] 42 0.001
gi|148806906 AKT1 substrate 1 (proline-rich) [Homo sapiens] 42 0.001
gi|148806896 AKT1 substrate 1 (proline-rich) [Homo sapiens] 42 0.001
gi|4758392 forkhead box D1 [Homo sapiens] 42 0.001
gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta... 41 0.002
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 41 0.002
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 40 0.003
gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ... 40 0.003
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 39 0.006
gi|54873602 hypothetical protein LOC220382 [Homo sapiens] 38 0.013
gi|12751477 forkhead box L2 [Homo sapiens] 38 0.017
gi|110832843 TBP-associated factor 4 [Homo sapiens] 38 0.017
gi|5454106 TBP-related factor 10 [Homo sapiens] 38 0.017
gi|39812378 RAN binding protein 9 [Homo sapiens] 37 0.029
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 37 0.038
gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap... 37 0.038
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 36 0.050
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 36 0.050
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 36 0.050
gi|21687188 hypothetical protein LOC146325 [Homo sapiens] 36 0.050
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 36 0.050
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 36 0.050
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 36 0.065
>gi|93140999 lunatic fringe isoform a [Homo sapiens]
Length = 379
Score = 779 bits (2012), Expect = 0.0
Identities = 379/379 (100%), Positives = 379/379 (100%)
Query: 1 MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA 60
MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA
Sbjct: 1 MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA 60
Query: 61 AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK 120
AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK
Sbjct: 61 AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK 120
Query: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK 180
TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK
Sbjct: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK 180
Query: 181 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV 240
MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV
Sbjct: 181 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV 240
Query: 241 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL 300
SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL
Sbjct: 241 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL 300
Query: 301 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRFR 360
LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRFR
Sbjct: 301 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRFR 360
Query: 361 SIHCHLYPDTPWCPRTAIF 379
SIHCHLYPDTPWCPRTAIF
Sbjct: 361 SIHCHLYPDTPWCPRTAIF 379
>gi|93141005 lunatic fringe isoform b [Homo sapiens]
Length = 361
Score = 729 bits (1882), Expect = 0.0
Identities = 358/359 (99%), Positives = 359/359 (100%)
Query: 1 MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA 60
MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA
Sbjct: 1 MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAA 60
Query: 61 AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK 120
AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK
Sbjct: 61 AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK 120
Query: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK 180
TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK
Sbjct: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCK 180
Query: 181 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV 240
MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV
Sbjct: 181 MAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERV 240
Query: 241 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL 300
SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL
Sbjct: 241 SENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL 300
Query: 301 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRF 359
LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSR+
Sbjct: 301 LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRW 359
>gi|74271816 radical fringe [Homo sapiens]
Length = 331
Score = 383 bits (983), Expect = e-106
Identities = 199/319 (62%), Positives = 233/319 (73%), Gaps = 6/319 (1%)
Query: 63 APGALVRDVHSLSEYFS--LLTRARRDAGPPPGAAPRPADGHP--RPLAEPLAPRDVFIA 118
A GAL R +L+ + LL P P P PA P RP A L P DVFIA
Sbjct: 4 ARGALCRACLALAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLRPDDVFIA 63
Query: 119 VKTTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVI-TNCSAAHSRQAL 177
VKTT+K H RL LLL TWISR ++ TFIFTDG+D L G+ VI TNCSA +RQAL
Sbjct: 64 VKTTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAVRTRQAL 123
Query: 178 SCKMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAM 237
CKM+VEYD+FIESGRKWFCHVDDDNYVN R+LL LL+S+ ++DVY+G+PSLD PI+A
Sbjct: 124 CCKMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPIEAT 183
Query: 238 ERVSENK-VRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYI 296
ERV + V V FWFATGGAGFC+SRGLALKMSPWAS G FM+TAE++RLPDDCT+GYI
Sbjct: 184 ERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAEQVRLPDDCTVGYI 243
Query: 297 VEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADP 356
VE LLG L+ S LFHSHLENLQ++P L +QVTLS+G EN N V+V G FS+ DP
Sbjct: 244 VEGLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLSHGGPENPHNVVNVAGGFSLHQDP 303
Query: 357 SRFRSIHCHLYPDTPWCPR 375
+RF+SIHC LYPDT WCPR
Sbjct: 304 TRFKSIHCLLYPDTDWCPR 322
>gi|21536461 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
[Homo sapiens]
Length = 321
Score = 370 bits (951), Expect = e-103
Identities = 178/279 (63%), Positives = 212/279 (75%), Gaps = 1/279 (0%)
Query: 98 PADGHPRPLAEPLAPRDVFIAVKTTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALA 157
P P P L DVFIAVKTT+ FHR RL+LLL+TW+SR +E TF+FTD D+ L
Sbjct: 39 PELSQPNPGPPKLQLHDVFIAVKTTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQ 98
Query: 158 RHTGN-VVITNCSAAHSRQALSCKMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLAS 216
G+ +V+TNCSA HS ALSCKMA E+D F+ SG +WFCHVDDDNYVN RALL+LL +
Sbjct: 99 ERLGSHLVVTNCSAEHSHPALSCKMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRA 158
Query: 217 YPHTRDVYVGKPSLDRPIQAMERVSENKVRPVHFWFATGGAGFCISRGLALKMSPWASGG 276
+P RDVYVG+PSL+RPI A E N+ R V FWFATGGAGFCI+R LALKM+PWASG
Sbjct: 159 FPLARDVYVGRPSLNRPIHASEPQPHNRTRLVQFWFATGGAGFCINRKLALKMAPWASGS 218
Query: 277 HFMNTAERIRLPDDCTIGYIVEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGM 336
FM+T+ IRLPDDCT+GYI+E LG L S LFHSHLE LQ + T++L EQVTLSYG+
Sbjct: 219 RFMDTSALIRLPDDCTMGYIIECKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGV 278
Query: 337 FENKRNAVHVKGPFSVEADPSRFRSIHCHLYPDTPWCPR 375
FE K N + ++GPFS E DPSRFRS+HC LYPDTPWCP+
Sbjct: 279 FEGKLNVIKLQGPFSPEEDPSRFRSLHCLLYPDTPWCPQ 317
>gi|154689817 beta 1,3-galactosyltransferase-like [Homo sapiens]
Length = 498
Score = 64.3 bits (155), Expect = 2e-10
Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 32/230 (13%)
Query: 108 EPLAPRDVFIAVKTTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITN 167
+P+ +D+F+AVKT KKFH R+ ++ +TW S+ + + ++D + ++ T ++ I N
Sbjct: 262 KPVKKKDIFVAVKTCKKFHGDRIPIVKQTWESQASLIEY-YSDYTENSIP--TVDLGIPN 318
Query: 168 CSAAHSRQALSCKMAVEYDRFIESGR---KWFCHVDDDNYVNLRALLRLLASYPHTRDVY 224
H + + +RF+ + W VDDD +++ L LL+ Y V+
Sbjct: 319 TDRGHCGKTFAI-----LERFLNRSQDKTAWLVIVDDDTLISISRLQHLLSCYDSGEPVF 373
Query: 225 VGKPSLDRPIQAMERVSENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAER 284
+G ER + + + TGG G SR A++ + + N A
Sbjct: 374 LG-----------ERYGYG-LGTGGYSYITGGGGMVFSRE-AVRRLLASKCRCYSNDA-- 418
Query: 285 IRLPDDCTIGYIVEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSY 334
PDD +G LG+P+ S LFH P L QV +S+
Sbjct: 419 ---PDDMVLGMCFSG-LGIPVTHSPLFHQ--ARPVDYPKDYLSHQVPISF 462
>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
Length = 882
Score = 50.4 bits (119), Expect = 3e-06
Identities = 82/354 (23%), Positives = 127/354 (35%), Gaps = 51/354 (14%)
Query: 29 PPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRDA 88
PPP RGR P GA PG AA P E RRD
Sbjct: 106 PPPLQQRRRGRE-------PEGATGLPGAPAAEGEP----------EEEDGGAAGQRRDG 148
Query: 89 GPPPGAAPRPADGHPRPLAEPLAPRD-VFIAVKTTKKFHRARLDLLLETWISRHKEMTFI 147
P + G A PRD +++ V T +K+ +R TW
Sbjct: 149 RP---GSSHNGSGDGGAAAPSARPRDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEF 205
Query: 148 FTDGEDEALARHTGNVVITNCSAAHSRQALSCK--MAVEY--DRFIESGRKWFCHVDDDN 203
F+ + + + + K M ++Y D +++ +WF DDD
Sbjct: 206 FSSQQPPNAGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMHDHYLDK-YEWFMRADDDV 264
Query: 204 YVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERVSENKVRPVHFWFATGGAGFCISR 263
Y+ L L S ++ +Y+G+ L +E + + + P F GG G SR
Sbjct: 265 YIKGDKLEEFLRSLNSSKPLYLGQTGLGN----IEELGKLGLEPGEN-FCMGGPGMIFSR 319
Query: 264 GLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEALLGVPLIRS----GLFHSHLEN-- 317
+ +M P G + E +D +G V G + S LFH + E+
Sbjct: 320 EVLRRMVPHI--GECLR--EMYTTHEDVEVGRCVRRFGGTQCVWSYEMQQLFHENYEHNR 375
Query: 318 ---LQQVPTSELHEQVTLSYGMFENKRNAVHVK---GPFSVEADPSRFRSIHCH 365
+Q + S++H +TL NKR A + S + R+R+I H
Sbjct: 376 KGYIQDLHNSKIHAAITL----HPNKRPAYQYRLHNYMLSRKISELRYRTIQLH 425
>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
Length = 802
Score = 48.9 bits (115), Expect = 7e-06
Identities = 78/335 (23%), Positives = 127/335 (37%), Gaps = 55/335 (16%)
Query: 9 LLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALV 68
LL + G +LA LVL P +E R R A P G AAA+ G
Sbjct: 13 LLGLVLGFVLASRLVL-------PRASELKRAGPRRRASPEGCRSGQ---AAASQAGGAR 62
Query: 69 RDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVKTTKKFHRA 128
D + PPG+ P DG PR +F+ V T +K+ +
Sbjct: 63 GDARGAQLW-------------PPGSDP---DGGPRDR------NFLFVGVMTAQKYLQT 100
Query: 129 RLDLLLETWISRHK-EMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCKMA-VEYD 186
R TW ++ F ++G D ++ V + ++ Q S M +D
Sbjct: 101 RAVAAYRTWSKTIPGKVQFFSSEGSDTSVPIPV--VPLRGVDDSYPPQKKSFMMLKYMHD 158
Query: 187 RFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERVSENKVR 246
+++ +WF DDD Y+ L L S + +++G+ L E + + +
Sbjct: 159 HYLDK-YEWFMRADDDVYIKGDRLENFLRSLNSSEPLFLGQTGLG----TTEEMGKLALE 213
Query: 247 PVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEALLGVPLI 306
P F GG G +SR + +M P E +D +G V GV +
Sbjct: 214 PGEN-FCMGGPGVIMSREVLRRMVPHIG----KCLREMYTTHEDVEVGRCVRRFAGVQCV 268
Query: 307 RS----GLFHSHLEN-----LQQVPTSELHEQVTL 332
S LF+ + E ++ + S++H+ +TL
Sbjct: 269 WSYEMQQLFYENYEQNKKGYIRDLHNSKIHQAITL 303
>gi|148806884 AKT1 substrate 1 (proline-rich) [Homo sapiens]
Length = 256
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/85 (37%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 21 LLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSL 80
L++LTA PPPPP P GP A A G GA A A R +H ++
Sbjct: 28 LVLLTAAPPPPPRP------------GPCAYA-AHGRGALAEAAR---RCLHDIALAHRA 71
Query: 81 LTRARRDAGPPPGAAPRPADGHPRP 105
T AR A PP P P PRP
Sbjct: 72 ATAARPPAPPPAPQPPSPTPSPPRP 96
>gi|148806906 AKT1 substrate 1 (proline-rich) [Homo sapiens]
Length = 256
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/85 (37%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 21 LLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSL 80
L++LTA PPPPP P GP A A G GA A A R +H ++
Sbjct: 28 LVLLTAAPPPPPRP------------GPCAYA-AHGRGALAEAAR---RCLHDIALAHRA 71
Query: 81 LTRARRDAGPPPGAAPRPADGHPRP 105
T AR A PP P P PRP
Sbjct: 72 ATAARPPAPPPAPQPPSPTPSPPRP 96
>gi|148806896 AKT1 substrate 1 (proline-rich) [Homo sapiens]
Length = 256
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/85 (37%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 21 LLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSL 80
L++LTA PPPPP P GP A A G GA A A R +H ++
Sbjct: 28 LVLLTAAPPPPPRP------------GPCAYA-AHGRGALAEAAR---RCLHDIALAHRA 71
Query: 81 LTRARRDAGPPPGAAPRPADGHPRP 105
T AR A PP P P PRP
Sbjct: 72 ATAARPPAPPPAPQPPSPTPSPPRP 96
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 41.6 bits (96), Expect = 0.001
Identities = 40/113 (35%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 9 LLLALAGALLACLLVLTADPPPPP---LPAERGRRALRSLAGPAGAA---PAPGLGAAAA 62
L A A A A + PPPPP AE R A P GAA P P A A
Sbjct: 291 LFAAAAAAAAAAAFHPHSPPPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAG 350
Query: 63 APG--ALVRDVHSLSEYF-SLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112
PG AL R S+ L A A AA A P P+A P AP
Sbjct: 351 GPGASALARSPFSIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAP 403
>gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta)
[Homo sapiens]
Length = 728
Score = 40.8 bits (94), Expect = 0.002
Identities = 42/120 (35%), Positives = 47/120 (39%), Gaps = 22/120 (18%)
Query: 12 ALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAP---------------- 55
ALA + + LL L A P AE RRALR AGP G A P
Sbjct: 169 ALADGIKSFLLALPAPLVTPEASAE-ARRALREAAGPVGPALEPPTLPLHRALTLRFLLQ 227
Query: 56 GLGAAAAAPGALVRDVHSLSEYFS--LLTRARRDAGPPPGAAP---RPADGHPRPLAEPL 110
LG A AL V +L F LL + PPPG AP P+ P L E L
Sbjct: 228 HLGRVARRAPALGPAVRALGATFGPLLLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKL 287
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/91 (38%), Positives = 39/91 (42%), Gaps = 25/91 (27%)
Query: 25 TADPPPPPLP--AERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLT 82
T PPPPP P A RA R+ A A A P+PG A PG
Sbjct: 130 TPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPG----PAQPG----------------P 169
Query: 83 RARRDAGPPPGAAPRPADGHPRPLAEPLAPR 113
RA+R A P AAP PA P +A P PR
Sbjct: 170 RAQRAA---PLAAPPPAPAAPPAVAPPAGPR 197
Score = 34.3 bits (77), Expect = 0.19
Identities = 29/89 (32%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 26 ADPPPPPLPAERGRRALRS--LAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTR 83
A PP P PA+ G RA R+ LA P A AP A A P
Sbjct: 156 ATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPA----------VA 205
Query: 84 ARRDAGPPPGAAPRPADGHPRPLAEPLAP 112
AR PPP P P P +P P
Sbjct: 206 AREPPLPPPPQPPAPPQQQQPPPPQPQPP 234
>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
sapiens]
Length = 261
Score = 40.0 bits (92), Expect = 0.003
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 17 LLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPG 65
L+ L++ T P PPP A R RR AG GAAPAP G+ A PG
Sbjct: 168 LMLMLMLPTLQPLPPPGSARRPRRGR---AGRGGAAPAPPTGSMRAGPG 213
>gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo
sapiens]
Length = 261
Score = 40.0 bits (92), Expect = 0.003
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 17 LLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPG 65
L+ L++ T P PPP A R RR AG GAAPAP G+ A PG
Sbjct: 168 LMLMLMLPTLQPLPPPGSARRPRRGR---AGRGGAAPAPPTGSMRAGPG 213
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 39.3 bits (90), Expect = 0.006
Identities = 38/111 (34%), Positives = 46/111 (41%), Gaps = 21/111 (18%)
Query: 13 LAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVH 72
L G+ L V PP PP PA R R RS A P+ A+P P A+P +
Sbjct: 609 LVGSSLRAPTVPPPLPPTPPQPARRQSR--RSPASPSPASPGP------ASPSPV----- 655
Query: 73 SLSEYFSLLTRARRDAG--PPPGAAPRPADGHPRPLAEPLAPRDVFIAVKT 121
SL A+ D G G AP G P P A P PR +A +T
Sbjct: 656 ------SLSNPAQVDLGAATAEGGAPEAISGVPTPPAIPPQPRPRSLASET 700
>gi|54873602 hypothetical protein LOC220382 [Homo sapiens]
Length = 426
Score = 38.1 bits (87), Expect = 0.013
Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 20 CLLVLTADPPPPPLPAERGRRALRSLAGPAG---AAPAPGLGA----AAAAPGALVRDVH 72
C ++ A PP PP P+ A R LA P+ AAPA G A A+ A A
Sbjct: 104 CSGLMGAAPPGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSR 163
Query: 73 SLSEYFSLLTRARRDAGPPPGAAPRPADG 101
SL+ F L A P G PA G
Sbjct: 164 SLAALFDSLRHVPGGAEPAGGEVAAPAAG 192
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 37.7 bits (86), Expect = 0.017
Identities = 30/91 (32%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 29 PPPPLPAERGRRALRSLAGPAGAAPA-PGLGAAAAAPGALVRDVHSLSEYFSLLTRAR-- 85
PP P+P + A + A A AA A PG AAA L S Y + + A
Sbjct: 209 PPSPMPYASCQMAAAAAAAAAAAAAAGPGSPGAAAVVKGLAGPAASYGPYTRVQSMALPP 268
Query: 86 ------RDAGPPPGAAPRPADGHPRPLAEPL 110
G PP A P P HP P A L
Sbjct: 269 GVVNSYNGLGGPPAAPPPPPHPHPHPHAHHL 299
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 37.7 bits (86), Expect = 0.017
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 25 TADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFS----- 79
+A P P PA G + GP AA AP G A +P +V+ ++ +
Sbjct: 308 SAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPA 367
Query: 80 ------LLTRARRDAGPPPGAAPRPADGHPRPLAEPLA 111
++ + A P P A P PA G P L + A
Sbjct: 368 STAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAA 405
Score = 34.3 bits (77), Expect = 0.19
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 28 PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRD 87
P P PA + R AG AP P A AA P + +L RA
Sbjct: 116 PAGPAPPAAKLRPPPEGSAG--SCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPG 173
Query: 88 AGPPPGAAPRPADGHP 103
GP PG P P G P
Sbjct: 174 PGPGPGPGPGPGPGKP 189
Score = 32.3 bits (72), Expect = 0.72
Identities = 25/77 (32%), Positives = 27/77 (35%), Gaps = 15/77 (19%)
Query: 29 PPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRDA 88
PPP A + A AG PAP A A P AL AR
Sbjct: 128 PPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALA---------------ARAGP 172
Query: 89 GPPPGAAPRPADGHPRP 105
GP PG P P G +P
Sbjct: 173 GPGPGPGPGPGPGPGKP 189
Score = 30.0 bits (66), Expect = 3.6
Identities = 38/121 (31%), Positives = 45/121 (37%), Gaps = 31/121 (25%)
Query: 19 ACLLVLTADPPPPPLPAE-RGRRALRSLAGPAGAAPAPGLG-----AAAAAPG------- 65
A V P P PA+ G AL + AGP G P PG G A PG
Sbjct: 142 AAAAVAAGPEPAPAGPAKPAGPAALAARAGP-GPGPGPGPGPGPGPGKPAGPGAAQTLNG 200
Query: 66 --ALVRDVHSLSEYFSLLTRA-------RRDAGP------PP--GAAPRPADGHPRPLAE 108
AL+ H+ + SL+ + A P PP GAA PA P P A
Sbjct: 201 SAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAA 260
Query: 109 P 109
P
Sbjct: 261 P 261
Score = 29.6 bits (65), Expect = 4.7
Identities = 32/94 (34%), Positives = 35/94 (37%), Gaps = 33/94 (35%)
Query: 30 PPPLPAERGRRA-----LRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRA 84
P P PA G + + A PA AAP+P A AAP A
Sbjct: 227 PLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAA------------------ 268
Query: 85 RRDAGPPPGAAP----RPADGHPR--PLAEPLAP 112
A PPP AP RP GHP P A P P
Sbjct: 269 ---APPPPPPAPATLARP-PGHPAGPPTAAPAVP 298
>gi|5454106 TBP-related factor 10 [Homo sapiens]
Length = 218
Score = 37.7 bits (86), Expect = 0.017
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 25 TADPPPPPLPAERG---RRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLL 81
+A P PP+ A A + A PAG A PG GAAA G L +E
Sbjct: 19 SAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARAGEPAERRGAA 78
Query: 82 TRARRDAGPPPGA-------APRPADGHPRPL 106
+ A PP GA P A+G +P+
Sbjct: 79 PVSAGGAAPPEGAISNGVYVLPSAANGDVKPV 110
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 37.0 bits (84), Expect = 0.029
Identities = 36/122 (29%), Positives = 45/122 (36%), Gaps = 27/122 (22%)
Query: 15 GALLACLLV--------LTADPPPPPLPAERGRRA------------LRSLAGPAGAAPA 54
GA A LL+ TA PPPPP P A L + GPAG AP
Sbjct: 61 GAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPT 120
Query: 55 PGLGAAAAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRD 114
P L A ++A +L+E L R + P D PL +P+D
Sbjct: 121 PALVAGSSAAAPFPHGDSALNEQEKELQRRLKRLYP-------AVDEQETPLPRSWSPKD 173
Query: 115 VF 116
F
Sbjct: 174 KF 175
Score = 31.2 bits (69), Expect = 1.6
Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 24 LTADPPPPPLPAERGRRALRSLAGPAGAAPAPGL-----------GAAAAAPGALVRDVH 72
++ PPPPP P ++ ++ S PA AP G+ + A +PG
Sbjct: 1 MSGQPPPPP-PQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGGAGG-E 58
Query: 73 SLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112
L + L PP AAP P P P A AP
Sbjct: 59 GLGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAP 98
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 36.6 bits (83), Expect = 0.038
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 3 KRCGRRLLLALAGALLACL----LVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLG 58
+ C LLL L G LLA + L P PP P + G+ + AGP G PG
Sbjct: 5 RACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPK 64
Query: 59 AAAAAPG 65
A PG
Sbjct: 65 GAPGKPG 71
>gi|122937187 glycosyltransferase 8 domain containing 4 [Homo
sapiens]
Length = 443
Score = 36.6 bits (83), Expect = 0.038
Identities = 47/153 (30%), Positives = 56/153 (36%), Gaps = 28/153 (18%)
Query: 9 LLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALV 68
LLLALA LLA L + PP LPA R A P PG A PGA
Sbjct: 11 LLLALAALLLALLSLRAGRAEPPALPARPASAPQRHPAPVPARWPGPG-----ALPGA-- 63
Query: 69 RDVHSLSEYFSLLTRARRDAGPPPGAAPRPA---------DGHPRPLAEPLAPR-DVFIA 118
S R RR P P A R A G PR L P + +A
Sbjct: 64 ----------SPGVRRRRPPRPRPRAGRRGAARLEKLARRPGEPRSFQAVLPPELWIHLA 113
Query: 119 VKTTKKFHRARLDLLLETWISRHKEMTF-IFTD 150
V L +L + H+++ F IFT+
Sbjct: 114 VVACGNRLEETLVMLKSAVLFSHRKIQFHIFTE 146
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 36.2 bits (82), Expect = 0.050
Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 28 PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRD 87
P P P ++G + +GP G PGL A GA A
Sbjct: 1348 PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA---------------KGATGP 1392
Query: 88 AGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVKTTKKFHRARL 130
GP + GHP P E + P + + KT + +RL
Sbjct: 1393 GGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRL 1435
Score = 33.9 bits (76), Expect = 0.25
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 24 LTADPPPPPLPAERGRRALRSLAGPAGAAPAPG--------LGAAAAAPGALVRDVHSLS 75
+ +P P P ERG L G GA PG G+ G +V + +
Sbjct: 329 IQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQA 388
Query: 76 EYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112
+ ++L +AR PPG P G P PL +P +P
Sbjct: 389 Q--AILQQARLALRGPPG--PMGYTGRPGPLGQPGSP 421
Score = 30.0 bits (66), Expect = 3.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 25 TADPPPPPLPAERGRRALRSL------AGPAGAAPAPGLGAAAAAPGA 66
T DP PP L E+G+ + L GP G+ PG A+ GA
Sbjct: 694 TGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGA 741
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 36.2 bits (82), Expect = 0.050
Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 28 PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRD 87
P P P ++G + +GP G PGL A GA A
Sbjct: 1327 PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA---------------KGATGP 1371
Query: 88 AGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVKTTKKFHRARL 130
GP + GHP P E + P + + KT + +RL
Sbjct: 1372 GGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRL 1414
Score = 33.9 bits (76), Expect = 0.25
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 24 LTADPPPPPLPAERGRRALRSLAGPAGAAPAPG--------LGAAAAAPGALVRDVHSLS 75
+ +P P P ERG L G GA PG G+ G +V + +
Sbjct: 308 IQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQA 367
Query: 76 EYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112
+ ++L +AR PPG P G P PL +P +P
Sbjct: 368 Q--AILQQARLALRGPPG--PMGYTGRPGPLGQPGSP 400
Score = 30.0 bits (66), Expect = 3.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 25 TADPPPPPLPAERGRRALRSL------AGPAGAAPAPGLGAAAAAPGA 66
T DP PP L E+G+ + L GP G+ PG A+ GA
Sbjct: 673 TGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGA 720
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 36.2 bits (82), Expect = 0.050
Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 28 PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRD 87
P P P ++G + +GP G PGL A GA A
Sbjct: 1434 PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA---------------KGATGP 1478
Query: 88 AGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVKTTKKFHRARL 130
GP + GHP P E + P + + KT + +RL
Sbjct: 1479 GGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRL 1521
Score = 33.9 bits (76), Expect = 0.25
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 24 LTADPPPPPLPAERGRRALRSLAGPAGAAPAPG--------LGAAAAAPGALVRDVHSLS 75
+ +P P P ERG L G GA PG G+ G +V + +
Sbjct: 415 IQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQA 474
Query: 76 EYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAP 112
+ ++L +AR PPG P G P PL +P +P
Sbjct: 475 Q--AILQQARLALRGPPG--PMGYTGRPGPLGQPGSP 507
Score = 30.0 bits (66), Expect = 3.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 25 TADPPPPPLPAERGRRALRSL------AGPAGAAPAPGLGAAAAAPGA 66
T DP PP L E+G+ + L GP G+ PG A+ GA
Sbjct: 780 TGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGA 827
>gi|21687188 hypothetical protein LOC146325 [Homo sapiens]
Length = 571
Score = 36.2 bits (82), Expect = 0.050
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 29 PPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRDA 88
P P P E A P GAAPAP L +V D+HSL +RA+
Sbjct: 88 PTPDRPGESDPGRQPQGARPTGAAPAPDL---------VVADIHSLHCGGGPKSRAKGSP 138
Query: 89 GPPPGAA 95
GPPP A
Sbjct: 139 GPPPPVA 145
>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
Length = 1178
Score = 36.2 bits (82), Expect = 0.050
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 28 PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAA--------PGALVRDVHSLSEYFS 79
PPPPP PA R L P G P GAAA A P A +R+ + E+F
Sbjct: 44 PPPPPPPAGPSRGPLPPPPPPRGLGPPVAGGAAAGAGMPGGGGGPSAALREQERVYEWFG 103
Query: 80 LL 81
L+
Sbjct: 104 LV 105
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 36.2 bits (82), Expect = 0.050
Identities = 27/86 (31%), Positives = 36/86 (41%)
Query: 24 LTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTR 83
LT PP P L + PA AA P L + A++ + +V +L++ S
Sbjct: 1584 LTPGPPHPLPDTPAPATPLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGASAAPG 1643
Query: 84 ARRDAGPPPGAAPRPADGHPRPLAEP 109
GPP AAP PA P P P
Sbjct: 1644 DPHPPGPPAPAAPAPAAPQPGPDPPP 1669
Score = 32.7 bits (73), Expect = 0.55
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 19/86 (22%)
Query: 29 PPPPLPAERGRRALRSLAGPAGAAPAPGLG--AAAAAPGALVRDVHSLSEYFSLLTRARR 86
PP PLP PA A P P + A AAAP L SL+ Y S + +
Sbjct: 1588 PPHPLPDT-----------PAPATPLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQ 1636
Query: 87 DAGPPPGAAPRPADGHPRPLAEPLAP 112
GA+ P D HP P AP
Sbjct: 1637 ------GASAAPGDPHPPGPPAPAAP 1656
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 35.8 bits (81), Expect = 0.065
Identities = 34/95 (35%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 27 DPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARR 86
DP P LP +G ++ L GP+G PGL A + PGAL + F L +
Sbjct: 363 DPGVPGLPGLKGDEGIQGLRGPSGV---PGLPALSGVPGALG------PQGFPGL---KG 410
Query: 87 DAGPPP----GAAPRPA-DGHPRPLAEPLAPRDVF 116
D G P GAA P DG P P P P F
Sbjct: 411 DQGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPEF 445
Score = 30.4 bits (67), Expect = 2.7
Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 24 LTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTR 83
+ DP P L G + G G A PGL PG L D ++ F
Sbjct: 170 MKGDPGLPGLDGITGPQGAPGFPGAVGPAGPPGLQGPPGPPGPLGPD-GNMGLGFQGEKG 228
Query: 84 ARRDAGPPPGAAPRPADG 101
+ D G P A P P+ G
Sbjct: 229 VKGDVGLPGPAGPPPSTG 246
Score = 29.6 bits (65), Expect = 4.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 28 PPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPG 65
P P L ++G R L GPAG APG+ + G
Sbjct: 1219 PGKPGLRGQKGDRGFPGLQGPAGLPGAPGISLPSLIAG 1256
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,438,837
Number of Sequences: 37866
Number of extensions: 948051
Number of successful extensions: 9930
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 338
Number of HSP's that attempted gapping in prelim test: 7966
Number of HSP's gapped (non-prelim): 2106
length of query: 379
length of database: 18,247,518
effective HSP length: 104
effective length of query: 275
effective length of database: 14,309,454
effective search space: 3935099850
effective search space used: 3935099850
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.