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Search of human proteins with 9257251
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9257251 vesicle-associated membrane protein 1 isoform 3
[Homo sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo... 234 1e-62
gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Hom... 228 6e-61
gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo... 228 8e-61
gi|172072620 vesicle-associated membrane protein 2 (synaptobrevi... 177 2e-45
gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens] 138 1e-33
gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens] 80 5e-16
gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens] 69 6e-13
gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens] 58 2e-09
gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Ho... 48 1e-06
gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo... 48 1e-06
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 44 4e-05
gi|116235472 SH3-domain GRB2-like (endophilin) interacting prote... 35 0.017
gi|94429050 SEC22 vesicle trafficking protein homolog B [Homo sa... 35 0.017
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 0.11
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 0.11
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 0.11
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 32 0.11
gi|217416343 fibrosin-like 1 [Homo sapiens] 32 0.14
gi|18079216 CASK interacting protein 1 [Homo sapiens] 31 0.18
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 31 0.18
gi|190684671 mitogen-activated protein kinase binding protein 1 ... 31 0.18
gi|190684677 mitogen-activated protein kinase binding protein 1 ... 31 0.18
gi|33356148 formin-like 1 [Homo sapiens] 31 0.18
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ... 31 0.24
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ... 31 0.24
gi|32490572 erythrocyte membrane protein band 4.1-like 3 [Homo s... 31 0.24
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 31 0.24
gi|5730120 YKT6 v-SNARE protein [Homo sapiens] 31 0.24
gi|4885323 G protein-coupled receptor 37 [Homo sapiens] 30 0.31
gi|33457316 pleckstrin homology domain containing, family O memb... 30 0.31
>gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo
sapiens]
Length = 116
Score = 234 bits (597), Expect = 1e-62
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60
MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
Sbjct: 1 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60
Query: 61 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRD 116
KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRD
Sbjct: 61 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRD 116
>gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Homo
sapiens]
Length = 117
Score = 228 bits (582), Expect = 6e-61
Identities = 113/115 (98%), Positives = 114/115 (99%)
Query: 1 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60
MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
Sbjct: 1 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60
Query: 61 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRR 115
KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV +
Sbjct: 61 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSK 115
>gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo
sapiens]
Length = 118
Score = 228 bits (581), Expect = 8e-61
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60
MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
Sbjct: 1 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ 60
Query: 61 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113
KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV
Sbjct: 61 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113
>gi|172072620 vesicle-associated membrane protein 2 (synaptobrevin
2) [Homo sapiens]
Length = 116
Score = 177 bits (448), Expect = 2e-45
Identities = 88/112 (78%), Positives = 98/112 (87%), Gaps = 4/112 (3%)
Query: 2 SAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQK 61
+A PPA A GGPP PPPN+TSNRRLQQTQAQV+EVVDI+RVNVDKVLERDQK
Sbjct: 4 TAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQK 59
Query: 62 LSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113
LSELDDRADALQAGASQFE+SAAKLKRKYWWKN KMMI+LG ICAII+++I+
Sbjct: 60 LSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIII 111
>gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens]
Length = 100
Score = 138 bits (347), Expect = 1e-33
Identities = 68/91 (74%), Positives = 77/91 (84%)
Query: 23 GPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESS 82
GP SNRRLQQTQ QV+EVVDI+RVNVDKVLERDQKLSELDDRADALQAGASQFE+S
Sbjct: 4 GPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETS 63
Query: 83 AAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113
AAKLKRKYWWKNCKM + + I +++I+
Sbjct: 64 AAKLKRKYWWKNCKMWAIGITVLVIFIIIII 94
>gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens]
Length = 141
Score = 79.7 bits (195), Expect = 5e-16
Identities = 33/94 (35%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 20 GPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQF 79
GP GP N +++ Q QV+EV+D+++ N+ KV+ER ++L EL D++++L A+ F
Sbjct: 40 GPSGPRFG-PRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAF 98
Query: 80 ESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113
+ + +L+R+ WW+ CK+ ++ + AI+++VI+
Sbjct: 99 SNRSKQLRRQMWWRGCKIKAIMALVAAILLLVII 132
>gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens]
Length = 100
Score = 69.3 bits (168), Expect = 6e-13
Identities = 30/83 (36%), Positives = 57/83 (68%)
Query: 31 NRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKY 90
N R++ Q++VE V +I+ NV+++L R + L L ++ + L+A + F++++ K+ RK+
Sbjct: 10 NDRVRNLQSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEATSEHFKTTSQKVARKF 69
Query: 91 WWKNCKMMIMLGAICAIIVVVIV 113
WWKN KM++++ I II++ IV
Sbjct: 70 WWKNVKMIVLICVIVFIIILFIV 92
>gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens]
Length = 116
Score = 57.8 bits (138), Expect = 2e-09
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 34 LQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWK 93
L++ Q Q EV +I+R N KVLER KL+EL R+D L +S F + L +K W+
Sbjct: 6 LERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWE 65
Query: 94 N-----CKMMIMLGAICAIIVVVIV 113
N C ++++G + I++V++V
Sbjct: 66 NIRYRICVGLVVVGVLLIILIVLLV 90
>gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Homo
sapiens]
Length = 179
Score = 48.1 bits (113), Expect = 1e-06
Identities = 24/81 (29%), Positives = 48/81 (59%)
Query: 33 RLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWW 92
++ +TQAQV+E+ I+ N+D V +R ++L L D+ + L + F++++ L R
Sbjct: 84 KVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCM 143
Query: 93 KNCKMMIMLGAICAIIVVVIV 113
KN K+ I++ + + + +IV
Sbjct: 144 KNLKLTIIIIIVSIVFIYIIV 164
>gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo
sapiens]
Length = 220
Score = 48.1 bits (113), Expect = 1e-06
Identities = 24/81 (29%), Positives = 48/81 (59%)
Query: 33 RLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWW 92
++ +TQAQV+E+ I+ N+D V +R ++L L D+ + L + F++++ L R
Sbjct: 125 KVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCM 184
Query: 93 KNCKMMIMLGAICAIIVVVIV 113
KN K+ I++ + + + +IV
Sbjct: 185 KNLKLTIIIIIVSIVFIYIIV 205
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 43.5 bits (101), Expect = 4e-05
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 1 MSAPAQPPAEGTEGTAPGGG--PPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLER 58
M+A A+ P + EG+A GGG PP + ++LQ+ + EE+ + N E
Sbjct: 311 MAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQLQEQEEMQEEMEKLREENETLKNEI 370
Query: 59 DQKLSELDDRADA-LQAGASQFESSAAKLKRKYWWKNCKMM 98
D+ +E+D+ D + A Q + +L+R KNC+++
Sbjct: 371 DELRTEMDEMRDTFFEEDACQLQEMRHELERAN--KNCRIL 409
>gi|116235472 SH3-domain GRB2-like (endophilin) interacting protein
1 [Homo sapiens]
Length = 828
Score = 34.7 bits (78), Expect = 0.017
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 4 PAQPPAEGTEGT-APGG--GPPGPPPNMTSNRRLQQTQAQVEE 43
PA PA G G P G GPPGPP N+ S L++ Q +V E
Sbjct: 343 PADSPAPGPLGPPGPTGPPGPPGPPRNVLSPLNLEEVQKKVAE 385
>gi|94429050 SEC22 vesicle trafficking protein homolog B [Homo
sapiens]
Length = 215
Score = 34.7 bits (78), Expect = 0.017
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 30 SNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRK 89
+ R L ++++V I+ N+++VL+R + LS LD +A+ L + + ++ A L
Sbjct: 131 ARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMH 190
Query: 90 YWWKNCKMMIMLGAICAIIVVVIV 113
+ L A+ +++IV
Sbjct: 191 STYAK------LAAVAVFFIMLIV 208
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 7 PPAEGTEGTAPGGGPPGP-PPNMTSNRRLQQTQAQVEEVVDIIRVNV 52
P + E +A G PPGP PP TS+ R+ + Q E V ++ +N+
Sbjct: 409 PSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMMHMNI 455
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 3 APAQPPAEGTEGTAPGGGPPGPPPN 27
APAQ P E T G AP G P P N
Sbjct: 237 APAQNP-ELTPGPAPAGPTPAPETN 260
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 7 PPAEGTEGTAPGGGPPGP-PPNMTSNRRLQQTQAQVEEVVDIIRVNV 52
P + E +A G PPGP PP TS+ R+ + Q E V ++ +N+
Sbjct: 409 PSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMMHMNI 455
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 3 APAQPPAEGTEGTAPGGGPPGPPPN 27
APAQ P E T G AP G P P N
Sbjct: 237 APAQNP-ELTPGPAPAGPTPAPETN 260
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 7 PPAEGTEGTAPGGGPPGP-PPNMTSNRRLQQTQAQVEEVVDIIRVNV 52
P + E +A G PPGP PP TS+ R+ + Q E V ++ +N+
Sbjct: 409 PSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMMHMNI 455
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 3 APAQPPAEGTEGTAPGGGPPGPPPN 27
APAQ P E T G AP G P P N
Sbjct: 237 APAQNP-ELTPGPAPAGPTPAPETN 260
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 7 PPAEGTEGTAPGGGPPGP-PPNMTSNRRLQQTQAQVEEVVDIIRVNV 52
P + E +A G PPGP PP TS+ R+ + Q E V ++ +N+
Sbjct: 415 PSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVMMHMNI 461
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 3 APAQPPAEGTEGTAPGGGPPGPPPN 27
APAQ P E T G AP G P P N
Sbjct: 243 APAQNP-ELTPGPAPAGPTPAPETN 266
>gi|217416343 fibrosin-like 1 [Homo sapiens]
Length = 1045
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 11 GTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVD---IIRVNVDKVLERDQKL 62
G G P G P P RR +++ +Q EEV+D I + + LE+D L
Sbjct: 48 GLRGAPPRGAAPAPRTARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMAL 102
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 19/93 (20%)
Query: 1 MSAPAQPPAEGTEGTAPGGGPPGPP----PNMTSNRRLQQTQAQVEEVVDIIRVNV---- 52
+ PA+PP A PP PP P ++ ++L++T A + + + +
Sbjct: 1336 LHVPAKPPRAAAAAAAAAAAPPAPPEGASPGDSARQKLEETSACLAAALQAVEEKIRQED 1395
Query: 53 -----DKVLER------DQKLSELDDRADALQA 74
D E+ D S DD AD L A
Sbjct: 1396 AQGPRDSAAEKSTGSILDDIGSMFDDLADQLDA 1428
>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
Length = 434
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 3 APAQPPAEGTEGTAPGGGPPGPPPNMTS-----NRRLQQTQAQ 40
APA PA AP PP PPP++T + L QT AQ
Sbjct: 333 APAGAPAAPPTNAAPPAAPPPPPPHLTPEITPLSAALAQTIAQ 375
>gi|190684671 mitogen-activated protein kinase binding protein 1
isoform a [Homo sapiens]
Length = 1508
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 1 MSAPAQ-PPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVD 53
MS PAQ P A G + G PPG PP + + Q ++ R+N D
Sbjct: 1117 MSRPAQVPQASGEQPRGNGANPPGAPPEVEPSSGNPSPQQAASVLLPRCRLNPD 1170
>gi|190684677 mitogen-activated protein kinase binding protein 1
isoform b [Homo sapiens]
Length = 1514
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 1 MSAPAQ-PPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVD 53
MS PAQ P A G + G PPG PP + + Q ++ R+N D
Sbjct: 1123 MSRPAQVPQASGEQPRGNGANPPGAPPEVEPSSGNPSPQQAASVLLPRCRLNPD 1176
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 31.2 bits (69), Expect = 0.18
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 4 PAQPPAEGTEGTAPGGGPPGPPP 26
P PP GT+G P PP PPP
Sbjct: 589 PPPPPPPGTDGPVPPPPPPPPPP 611
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 3 APAQPPAEGTEGTAPGGGPPGPPP 26
+P PPA G P PP PPP
Sbjct: 571 SPEPPPAPPLPGDLPPPPPPPPPP 594
>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
sapiens]
Length = 1723
Score = 30.8 bits (68), Expect = 0.24
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 4 PAQPPAEGTEGTAPGGGPPGPPP 26
P QPP E + GGPP PPP
Sbjct: 826 PQQPPPPQPEASGSWGGPPPPPP 848
>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
sapiens]
Length = 1833
Score = 30.8 bits (68), Expect = 0.24
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 4 PAQPPAEGTEGTAPGGGPPGPPP 26
P QPP E + GGPP PPP
Sbjct: 826 PQQPPPPQPEASGSWGGPPPPPP 848
>gi|32490572 erythrocyte membrane protein band 4.1-like 3 [Homo
sapiens]
Length = 1087
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 9 AEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLE------RDQKL 62
A G +G A G P PP + L+Q A + R DK E + +
Sbjct: 22 AAGAQGRA--GAPVPEPPKEEQQQALEQFAAAAAHSTPVRREVTDKEQEFAARAAKQLEY 79
Query: 63 SELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGA 103
+L+D + ++ +S+ S K+ +K CK++++ G+
Sbjct: 80 QQLEDDKLSQKSSSSKLSRSPLKIVKKPKSMQCKVILLDGS 120
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 3 APAQPPAEGTEGT--APG-GGPPGPP 25
AP QP GT+G APG GPPGPP
Sbjct: 271 APGQPGIPGTKGLPGAPGIAGPPGPP 296
>gi|5730120 YKT6 v-SNARE protein [Homo sapiens]
Length = 198
Score = 30.8 bits (68), Expect = 0.24
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 34 LQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAK 85
+ + QA+++E I+ ++ +LER +KL +L +++ L + F +A K
Sbjct: 139 MTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARK 190
>gi|4885323 G protein-coupled receptor 37 [Homo sapiens]
Length = 613
Score = 30.4 bits (67), Expect = 0.31
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 2 SAPAQPPAEGTEGTAPGGGPPGPP 25
+AP + PA G A GPPGPP
Sbjct: 90 AAPGRDPAAGRGAEASAAGPPGPP 113
>gi|33457316 pleckstrin homology domain containing, family O member
2 [Homo sapiens]
Length = 490
Score = 30.4 bits (67), Expect = 0.31
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 4 PAQPPAEGTEGTAP--GGGPPGPPPNMTSNR 32
P+Q P T AP GG PP PPP + S +
Sbjct: 290 PSQAPCSETSEAAPREGGKPPTPPPKILSEK 320
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,367,797
Number of Sequences: 37866
Number of extensions: 262853
Number of successful extensions: 5021
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 3646
Number of HSP's gapped (non-prelim): 1513
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.