Guide to the Human Genome
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Name: RSPO4 Sequence: fasta or formatted (172aa) NCBI GI: 90970328
Description:

R-spondin family, member 4 isoform 2 precursor

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [234aa] R-spondin family, member 4 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          6           1
 C cysteine            9.9         17           1
 D aspartate           4.1          7           1
 E glutamate           4.1          7           2
 F phenylalanine       3.5          6           1
 G glycine             9.9         17           2
 H histidine           1.7          3           1
 I isoleucine          3.5          6           2
 K lysine              7.6         13           2
 L leucine             9.9         17           4
 M methionine          1.2          2           1
 N asparagine          2.9          5           1
 P proline             6.4         11           2
 Q glutamine           7.0         12           2
 R arginine           12.8         22           2
 S serine              2.9          5           1
 T threonine           4.1          7           1
 V valine              2.9          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   R-spondin family, member 4 isoform 2 precursor [Homo... 
RSPO4                 0.823   R-spondin family, member 4 isoform 1 precursor [Homo...
RSPO2                 0.346   R-spondin family, member 2 
RSPO1                 0.291   R-spondin1 
RSPO3                 0.291   R-spondin 3 
PCSK6                 0.094   paired basic amino acid cleaving system 4 isoform h ...
PCSK6                 0.094   paired basic amino acid cleaving system 4 isoform g ...
PCSK6                 0.094   paired basic amino acid cleaving system 4 isoform a p...
PCSK6                 0.094   paired basic amino acid cleaving system 4 isoform b ...
LOC100292811          0.091   PREDICTED: similar to proprotein convertase subtili...
LOC100290671          0.086   PREDICTED: hypothetical protein XP_002347099 
LOC100289618          0.086   PREDICTED: hypothetical protein XP_002342982 
FRAS1                 0.083   Fraser syndrome 1 
PCSK5                 0.083   proprotein convertase subtilisin/kexin type 5 prepro...
IGF1R                 0.040   insulin-like growth factor 1 receptor precursor [Homo...
MEGF6                 0.040   EGF-like-domain, multiple 3 
TNFRSF6B              0.040   tumor necrosis factor receptor superfamily, member 6...
LAMC1                 0.040   laminin, gamma 1 precursor 
TNFRSF6B              0.040   tumor necrosis factor receptor superfamily, member 6b...
MEGF11                0.040   multiple EGF-like-domains 11 
INSR                  0.037   insulin receptor isoform Short precursor 
INSR                  0.037   insulin receptor isoform Long precursor 
THBS1                 0.034   thrombospondin 1 precursor 
INSRR                 0.034   insulin receptor-related receptor precursor 
WIF1                  0.029   WNT inhibitory factor 1 precursor 
PEAR1                 0.029   platelet endothelial aggregation receptor 1 
FBLN5                 0.029   fibulin 5 precursor 
LTBP4                 0.029   latent transforming growth factor beta binding prot...
LTBP4                 0.029   latent transforming growth factor beta binding prot...
LTBP4                 0.029   latent transforming growth factor beta binding prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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