Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 8923444
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923444 nucleolar protein family A, member 2 isoform a [Homo
sapiens]
(153 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8923444 nucleolar protein family A, member 2 isoform a [Homo ... 313 5e-86
gi|77812674 nucleolar protein family A, member 2 isoform b [Homo... 156 6e-39
gi|51317376 NHP2 non-histone chromosome protein 2-like 1 [Homo s... 96 1e-20
gi|4826860 NHP2 non-histone chromosome protein 2-like 1 [Homo sa... 96 1e-20
gi|4506661 ribosomal protein L7a [Homo sapiens] 46 1e-05
gi|218156340 chapsyn-110 isoform 3 [Homo sapiens] 33 0.073
gi|218156338 chapsyn-110 isoform 1 [Homo sapiens] 33 0.073
gi|91199538 chapsyn-110 isoform 2 [Homo sapiens] 33 0.073
gi|218156270 chapsyn-110 isoform 4 [Homo sapiens] 33 0.073
gi|4827036 peptidoglycan recognition protein 1 [Homo sapiens] 31 0.36
gi|224809331 FK506 binding protein 5 isoform 2 [Homo sapiens] 30 0.62
gi|224809329 FK506 binding protein 5 isoform 1 [Homo sapiens] 30 0.62
gi|224809327 FK506 binding protein 5 isoform 1 [Homo sapiens] 30 0.62
gi|4758384 FK506 binding protein 5 isoform 1 [Homo sapiens] 30 0.62
gi|148222745 ribonuclease P/MRP 38 subunit [Homo sapiens] 29 1.4
gi|33859837 ribonuclease P/MRP 38 subunit [Homo sapiens] 29 1.4
gi|148238078 ribonuclease P/MRP 38 subunit [Homo sapiens] 29 1.4
gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo... 28 2.3
gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo... 28 2.3
gi|148539628 discs, large homolog 1 isoform 1 [Homo sapiens] 28 3.1
gi|148539578 discs, large homolog 1 isoform 2 [Homo sapiens] 28 3.1
gi|4557529 post-synaptic density protein 95 isoform 1 [Homo sapi... 28 4.0
gi|192447426 post-synaptic density protein 95 isoform 2 [Homo sa... 28 4.0
gi|52353250 olfactory receptor, family 52, subfamily E, member 2... 27 6.8
gi|90265805 phospholipase C, delta 1 isoform 2 [Homo sapiens] 27 8.9
gi|195972883 phospholipase C, delta 1 isoform 1 [Homo sapiens] 27 8.9
gi|46487911 zinc finger protein 406 isoform ZFAT-1 [Homo sapiens] 27 8.9
gi|71480169 zinc finger protein 406 isoform TR-ZFAT [Homo sapiens] 27 8.9
>gi|8923444 nucleolar protein family A, member 2 isoform a [Homo
sapiens]
Length = 153
Score = 313 bits (801), Expect = 5e-86
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI 60
MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI
Sbjct: 1 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI 60
Query: 61 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS 120
RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS
Sbjct: 61 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS 120
Query: 121 KRPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL 153
KRPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL
Sbjct: 121 KRPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL 153
>gi|77812674 nucleolar protein family A, member 2 isoform b [Homo
sapiens]
Length = 90
Score = 156 bits (395), Expect = 6e-39
Identities = 78/80 (97%), Positives = 78/80 (97%)
Query: 1 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI 60
MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI
Sbjct: 1 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI 60
Query: 61 RRGVKEVQKFVNKGEKGIMV 80
RRGVKEVQKFVNKGEKG V
Sbjct: 61 RRGVKEVQKFVNKGEKGTWV 80
>gi|51317376 NHP2 non-histone chromosome protein 2-like 1 [Homo
sapiens]
Length = 128
Score = 95.9 bits (237), Expect = 1e-20
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVY 91
NP A PLA LT+KL ++++ KQ+R+G E K +N+G +V+A D P+E+
Sbjct: 7 NPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEII 66
Query: 92 CHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRP--TCVIMVKPHEEYQEAYDECLEEVQSL 149
HLP++CED+N+PYV++ SK LG A G RP C + +K + ++ + ++ L
Sbjct: 67 LHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
>gi|4826860 NHP2 non-histone chromosome protein 2-like 1 [Homo
sapiens]
Length = 128
Score = 95.9 bits (237), Expect = 1e-20
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVY 91
NP A PLA LT+KL ++++ KQ+R+G E K +N+G +V+A D P+E+
Sbjct: 7 NPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEII 66
Query: 92 CHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRP--TCVIMVKPHEEYQEAYDECLEEVQSL 149
HLP++CED+N+PYV++ SK LG A G RP C + +K + ++ + ++ L
Sbjct: 67 LHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
>gi|4506661 ribosomal protein L7a [Homo sapiens]
Length = 266
Score = 46.2 bits (108), Expect = 1e-05
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 60 IRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAG 119
+R GV V V + ++V+A D PIE+ LP +C +PY I K LG
Sbjct: 136 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVH 195
Query: 120 SKRPTCVIMVKPHEEYQEAYDECLEEVQS 148
K T V + + E + A + +E +++
Sbjct: 196 RKTCTTVAFTQVNSEDKGALAKLVEAIRT 224
>gi|218156340 chapsyn-110 isoform 3 [Homo sapiens]
Length = 749
Score = 33.5 bits (75), Expect = 0.073
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 33 PIAQPLASRRLT--RKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEV 90
PIA + R L ++ K + + +K R +K Q+F GE ++ GDTL ++
Sbjct: 670 PIAIFIKPRSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEF---GEYFTAIVQGDTLE-DI 725
Query: 91 YCHLPVMCEDRNLPYVYIPSKTDL 114
Y ++ E+++ P+++IPSK L
Sbjct: 726 YNQCKLVIEEQSGPFIWIPSKEKL 749
>gi|218156338 chapsyn-110 isoform 1 [Homo sapiens]
Length = 975
Score = 33.5 bits (75), Expect = 0.073
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 33 PIAQPLASRRLT--RKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEV 90
PIA + R L ++ K + + +K R +K Q+F GE ++ GDTL ++
Sbjct: 896 PIAIFIKPRSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEF---GEYFTAIVQGDTLE-DI 951
Query: 91 YCHLPVMCEDRNLPYVYIPSKTDL 114
Y ++ E+++ P+++IPSK L
Sbjct: 952 YNQCKLVIEEQSGPFIWIPSKEKL 975
>gi|91199538 chapsyn-110 isoform 2 [Homo sapiens]
Length = 870
Score = 33.5 bits (75), Expect = 0.073
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 33 PIAQPLASRRLT--RKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEV 90
PIA + R L ++ K + + +K R +K Q+F GE ++ GDTL ++
Sbjct: 791 PIAIFIKPRSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEF---GEYFTAIVQGDTLE-DI 846
Query: 91 YCHLPVMCEDRNLPYVYIPSKTDL 114
Y ++ E+++ P+++IPSK L
Sbjct: 847 YNQCKLVIEEQSGPFIWIPSKEKL 870
>gi|218156270 chapsyn-110 isoform 4 [Homo sapiens]
Length = 334
Score = 33.5 bits (75), Expect = 0.073
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 33 PIAQPLASRRLT--RKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEV 90
PIA + R L ++ K + + +K R +K Q+F GE ++ GDTL ++
Sbjct: 255 PIAIFIKPRSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEF---GEYFTAIVQGDTLE-DI 310
Query: 91 YCHLPVMCEDRNLPYVYIPSKTDL 114
Y ++ E+++ P+++IPSK L
Sbjct: 311 YNQCKLVIEEQSGPFIWIPSKEKL 334
>gi|4827036 peptidoglycan recognition protein 1 [Homo sapiens]
Length = 196
Score = 31.2 bits (69), Expect = 0.36
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 108 IPSKTDLGAAAGSKRPTCVIMVKPHEEYQEAYDECLEEVQSLPL 151
+PS LGAA ++ P C + P E++ EC + + SLPL
Sbjct: 12 LPSLLRLGAAQETEDPACCSPIVPRNEWKALASECAQHL-SLPL 54
>gi|224809331 FK506 binding protein 5 isoform 2 [Homo sapiens]
Length = 268
Score = 30.4 bits (67), Expect = 0.62
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 62 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCE---------DRNLPYVYIPSKT 112
RGV ++ K V GE+ M+ GD +VY H DRN P+V+ K
Sbjct: 31 RGVLKIVKRVGNGEETPMI--GD----KVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKG 84
Query: 113 ------DLGAAAGSKRPTCVIMVKPHEEYQEA 138
D+G A K C ++ KP Y A
Sbjct: 85 QVIKAWDIGVATMKKGEICHLLCKPEYAYGSA 116
>gi|224809329 FK506 binding protein 5 isoform 1 [Homo sapiens]
Length = 457
Score = 30.4 bits (67), Expect = 0.62
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 62 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCE---------DRNLPYVYIPSKT 112
RGV ++ K V GE+ M+ GD +VY H DRN P+V+ K
Sbjct: 31 RGVLKIVKRVGNGEETPMI--GD----KVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKG 84
Query: 113 ------DLGAAAGSKRPTCVIMVKPHEEYQEA 138
D+G A K C ++ KP Y A
Sbjct: 85 QVIKAWDIGVATMKKGEICHLLCKPEYAYGSA 116
>gi|224809327 FK506 binding protein 5 isoform 1 [Homo sapiens]
Length = 457
Score = 30.4 bits (67), Expect = 0.62
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 62 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCE---------DRNLPYVYIPSKT 112
RGV ++ K V GE+ M+ GD +VY H DRN P+V+ K
Sbjct: 31 RGVLKIVKRVGNGEETPMI--GD----KVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKG 84
Query: 113 ------DLGAAAGSKRPTCVIMVKPHEEYQEA 138
D+G A K C ++ KP Y A
Sbjct: 85 QVIKAWDIGVATMKKGEICHLLCKPEYAYGSA 116
>gi|4758384 FK506 binding protein 5 isoform 1 [Homo sapiens]
Length = 457
Score = 30.4 bits (67), Expect = 0.62
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 62 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCE---------DRNLPYVYIPSKT 112
RGV ++ K V GE+ M+ GD +VY H DRN P+V+ K
Sbjct: 31 RGVLKIVKRVGNGEETPMI--GD----KVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKG 84
Query: 113 ------DLGAAAGSKRPTCVIMVKPHEEYQEA 138
D+G A K C ++ KP Y A
Sbjct: 85 QVIKAWDIGVATMKKGEICHLLCKPEYAYGSA 116
>gi|148222745 ribonuclease P/MRP 38 subunit [Homo sapiens]
Length = 283
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 57 QKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTD-LG 115
+KQ+ GV EV + + + E ++++ P + HL + R++P +P ++ +
Sbjct: 110 RKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIA 169
Query: 116 AAAGSKRPTCVIMVKPHEEYQEAYDECLEEVQSLPLP 152
G K + K ++ + + V SL +P
Sbjct: 170 PVIGLKCVLALAFKKNTTDFVDEVRAIIPRVPSLSVP 206
>gi|33859837 ribonuclease P/MRP 38 subunit [Homo sapiens]
Length = 283
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 57 QKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTD-LG 115
+KQ+ GV EV + + + E ++++ P + HL + R++P +P ++ +
Sbjct: 110 RKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIA 169
Query: 116 AAAGSKRPTCVIMVKPHEEYQEAYDECLEEVQSLPLP 152
G K + K ++ + + V SL +P
Sbjct: 170 PVIGLKCVLALAFKKNTTDFVDEVRAIIPRVPSLSVP 206
>gi|148238078 ribonuclease P/MRP 38 subunit [Homo sapiens]
Length = 283
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 57 QKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTD-LG 115
+KQ+ GV EV + + + E ++++ P + HL + R++P +P ++ +
Sbjct: 110 RKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIA 169
Query: 116 AAAGSKRPTCVIMVKPHEEYQEAYDECLEEVQSLPLP 152
G K + K ++ + + V SL +P
Sbjct: 170 PVIGLKCVLALAFKKNTTDFVDEVRAIIPRVPSLSVP 206
>gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo
sapiens]
Length = 1591
Score = 28.5 bits (62), Expect = 2.3
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 9 DGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR 61
+ PE+ + E +E L + NPI+ P + + LY + A+ ++++
Sbjct: 726 ESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQ 778
>gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo
sapiens]
Length = 1594
Score = 28.5 bits (62), Expect = 2.3
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 9 DGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR 61
+ PE+ + E +E L + NPI+ P + + LY + A+ ++++
Sbjct: 726 ESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQ 778
>gi|148539628 discs, large homolog 1 isoform 1 [Homo sapiens]
Length = 904
Score = 28.1 bits (61), Expect = 3.1
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 46 KLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPY 105
++ K + + +K R +K Q+F E ++ GDTL ++Y + + E+++ Y
Sbjct: 840 EMNKRLTEEQARKTFERAMKLEQEFT---EHFTAIVQGDTLE-DIYNQVKQIIEEQSGSY 895
Query: 106 VYIPSKTDL 114
+++P+K L
Sbjct: 896 IWVPAKEKL 904
>gi|148539578 discs, large homolog 1 isoform 2 [Homo sapiens]
Length = 926
Score = 28.1 bits (61), Expect = 3.1
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 46 KLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPY 105
++ K + + +K R +K Q+F E ++ GDTL ++Y + + E+++ Y
Sbjct: 862 EMNKRLTEEQARKTFERAMKLEQEFT---EHFTAIVQGDTLE-DIYNQVKQIIEEQSGSY 917
Query: 106 VYIPSKTDL 114
+++P+K L
Sbjct: 918 IWVPAKEKL 926
>gi|4557529 post-synaptic density protein 95 isoform 1 [Homo
sapiens]
Length = 767
Score = 27.7 bits (60), Expect = 4.0
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNK-GEKGIMVLAGDTLPIEV 90
+PIA + R L L I K + ++Q R+ K + E ++ GD+ E+
Sbjct: 687 HPIAIFIRPRSLENVLE--INKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFE-EI 743
Query: 91 YCHLPVMCEDRNLPYVYIPSKTDL 114
Y + + ED + PY+++P++ L
Sbjct: 744 YHKVKRVIEDLSGPYIWVPARERL 767
>gi|192447426 post-synaptic density protein 95 isoform 2 [Homo
sapiens]
Length = 721
Score = 27.7 bits (60), Expect = 4.0
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNK-GEKGIMVLAGDTLPIEV 90
+PIA + R L L I K + ++Q R+ K + E ++ GD+ E+
Sbjct: 641 HPIAIFIRPRSLENVLE--INKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFE-EI 697
Query: 91 YCHLPVMCEDRNLPYVYIPSKTDL 114
Y + + ED + PY+++P++ L
Sbjct: 698 YHKVKRVIEDLSGPYIWVPARERL 721
>gi|52353250 olfactory receptor, family 52, subfamily E, member 2
[Homo sapiens]
Length = 325
Score = 26.9 bits (58), Expect = 6.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 33 PIAQPLASRRLTRKLYKCIKKAVKQKQ 59
P+ P+ T+++YKC+KK + Q+Q
Sbjct: 286 PMLNPVIYGVRTKQIYKCVKKILLQEQ 312
>gi|90265805 phospholipase C, delta 1 isoform 2 [Homo sapiens]
Length = 756
Score = 26.6 bits (57), Expect = 8.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 41 RRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNK 73
++L ++ C++KA K K + KE+Q F+ +
Sbjct: 139 QKLQHWIHSCLRKADKNKDNKMSFKELQNFLKE 171
>gi|195972883 phospholipase C, delta 1 isoform 1 [Homo sapiens]
Length = 777
Score = 26.6 bits (57), Expect = 8.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 41 RRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNK 73
++L ++ C++KA K K + KE+Q F+ +
Sbjct: 160 QKLQHWIHSCLRKADKNKDNKMSFKELQNFLKE 192
>gi|46487911 zinc finger protein 406 isoform ZFAT-1 [Homo sapiens]
Length = 1243
Score = 26.6 bits (57), Expect = 8.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 22 RTYQELLVNQNPIAQPLASRRL---TRKLYKC 50
R YQE + Q P QP+ S RL K++ C
Sbjct: 242 RGYQEYAIQQTPYEQPMKSSRLGPTQLKIFTC 273
>gi|71480169 zinc finger protein 406 isoform TR-ZFAT [Homo sapiens]
Length = 846
Score = 26.6 bits (57), Expect = 8.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 22 RTYQELLVNQNPIAQPLASRRL---TRKLYKC 50
R YQE + Q P QP+ S RL K++ C
Sbjct: 230 RGYQEYAIQQTPYEQPMKSSRLGPTQLKIFTC 261
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,162,125
Number of Sequences: 37866
Number of extensions: 250334
Number of successful extensions: 728
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 28
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.