Guide to the Human Genome
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Name: RPP38 Sequence: fasta or formatted (283aa) NCBI GI: 33859837
Description:

ribonuclease P/MRP 38 subunit

Referenced in:

RNases and RNA Stability

Other entries for this name:
alt mRNA [283aa] ribonuclease P/MRP 38 subunit
alt mRNA [283aa] ribonuclease P/MRP 38 subunit
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         20           3
 C cysteine            1.4          4           1
 D aspartate           4.6         13           1
 E glutamate           7.1         20           1
 F phenylalanine       1.8          5           1
 G glycine             2.8          8           1
 H histidine           1.1          3           1
 I isoleucine          6.4         18           2
 K lysine             12.0         34           4
 L leucine            12.0         34           3
 M methionine          1.1          3           1
 N asparagine          3.2          9           2
 P proline             7.4         21           2
 Q glutamine           4.2         12           2
 R arginine            7.1         20           2
 S serine              7.8         22           1
 T threonine           4.9         14           2
 V valine              6.7         19           2
 W tryptophan          1.1          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribonuclease P/MRP 38 subunit 
RPP38                 1.000   ribonuclease P/MRP 38 subunit 
RPP38                 1.000   ribonuclease P/MRP 38 subunit 
TAOK1                 0.017   TAO kinase 1 
MAP1B                 0.017   microtubule-associated protein 1B 
RPL7A                 0.015   ribosomal protein L7a 
LOC727832             0.013   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.013   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.013   PREDICTED: hypothetical protein LOC645202 
LOC440243             0.013   PREDICTED: Putative golgin subfamily A member 6-lik...
KIAA0196              0.011   strumpellin 
RNF169                0.011   ring finger protein 169 
GOLGA4                0.011   golgi autoantigen, golgin subfamily a, 4 
DCTN1                 0.009   dynactin 1 isoform 4 
DCTN1                 0.009   dynactin 1 isoform 3 
DCTN1                 0.009   dynactin 1 isoform 2 
DCTN1                 0.009   dynactin 1 isoform 1 
PLEKHH2               0.009   pleckstrin homology domain containing, family H (wi...
UPF2                  0.009   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.009   UPF2 regulator of nonsense transcripts homolog [Homo...
NHP2L1                0.009   NHP2 non-histone chromosome protein 2-like 1 
NHP2L1                0.009   NHP2 non-histone chromosome protein 2-like 1 
TTN                   0.009   titin isoform N2-A 
CLIP1                 0.009   restin isoform b 
CLIP1                 0.009   restin isoform a 
EHBP1                 0.009   EH domain binding protein 1 isoform 3 
EHBP1                 0.009   EH domain binding protein 1 isoform 3 
EHBP1                 0.009   EH domain binding protein 1 isoform 2 
EHBP1                 0.009   EH domain binding protein 1 isoform 1 
KIF20B                0.009   M-phase phosphoprotein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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