Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 8923156
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923156 aprataxin isoform d [Homo sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28329436 aprataxin isoform a [Homo sapiens] 351 2e-97
gi|28329433 aprataxin isoform c [Homo sapiens] 351 2e-97
gi|28329427 aprataxin isoform d [Homo sapiens] 351 2e-97
gi|8923156 aprataxin isoform d [Homo sapiens] 351 2e-97
gi|28329430 aprataxin isoform b [Homo sapiens] 246 7e-66
gi|189217863 histidine triad nucleotide binding protein 3 [Homo ... 59 3e-09
gi|4885413 histidine triad nucleotide binding protein 1 [Homo sa... 46 1e-05
gi|14211923 PKCI-1-related HIT protein [Homo sapiens] 42 2e-04
gi|7661734 mRNA decapping enzyme [Homo sapiens] 38 0.004
gi|40217790 zinc finger protein 512 [Homo sapiens] 31 0.44
gi|13376064 zinc finger protein 408 [Homo sapiens] 30 0.97
gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo ... 30 1.3
gi|7662010 zinc finger protein 516 [Homo sapiens] 29 1.7
gi|169171323 PREDICTED: similar to hCG19534 [Homo sapiens] 29 2.2
gi|169172183 PREDICTED: similar to hCG19534 [Homo sapiens] 29 2.2
gi|169170925 PREDICTED: similar to hCG19534 [Homo sapiens] 29 2.2
gi|239508729 PREDICTED: similar to hCG19534 [Homo sapiens] 29 2.2
gi|16418391 zinc finger, imprinted 3 [Homo sapiens] 29 2.2
gi|46410933 zinc finger protein 528 [Homo sapiens] 29 2.2
gi|66932932 promyelocytic leukemia zinc finger protein [Homo sap... 28 2.8
gi|21359888 promyelocytic leukemia zinc finger protein [Homo sap... 28 2.8
gi|190610008 zinc finger protein 317 [Homo sapiens] 28 2.8
gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens] 28 3.7
gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens] 28 3.7
gi|239751768 PREDICTED: hypothetical protein XP_002347973 isofor... 28 4.8
gi|239751766 PREDICTED: hypothetical protein XP_002347974 isofor... 28 4.8
gi|239751764 PREDICTED: hypothetical protein XP_002347975 isofor... 28 4.8
gi|167234429 zinc finger and BTB domain containing 17 [Homo sapi... 28 4.8
gi|157743252 pecanex-like 3 [Homo sapiens] 28 4.8
gi|13540501 zinc finger protein 442 [Homo sapiens] 28 4.8
>gi|28329436 aprataxin isoform a [Homo sapiens]
Length = 342
Score = 351 bits (900), Expect = 2e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 60
MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV
Sbjct: 175 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 234
Query: 61 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 120
IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI
Sbjct: 235 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 294
Query: 121 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 168
EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
Sbjct: 295 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 342
>gi|28329433 aprataxin isoform c [Homo sapiens]
Length = 254
Score = 351 bits (900), Expect = 2e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 60
MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV
Sbjct: 87 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 146
Query: 61 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 120
IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI
Sbjct: 147 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 206
Query: 121 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 168
EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
Sbjct: 207 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 254
>gi|28329427 aprataxin isoform d [Homo sapiens]
Length = 168
Score = 351 bits (900), Expect = 2e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 60
MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV
Sbjct: 1 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 60
Query: 61 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 120
IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI
Sbjct: 61 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 120
Query: 121 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 168
EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
Sbjct: 121 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 168
>gi|8923156 aprataxin isoform d [Homo sapiens]
Length = 168
Score = 351 bits (900), Expect = 2e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 60
MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV
Sbjct: 1 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 60
Query: 61 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 120
IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI
Sbjct: 61 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 120
Query: 121 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 168
EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
Sbjct: 121 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 168
>gi|28329430 aprataxin isoform b [Homo sapiens]
Length = 306
Score = 246 bits (628), Expect = 7e-66
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 60
MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV
Sbjct: 189 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 248
Query: 61 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ 117
IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ
Sbjct: 249 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ 305
>gi|189217863 histidine triad nucleotide binding protein 3 [Homo
sapiens]
Length = 182
Score = 58.5 bits (140), Expect = 3e-09
Identities = 30/94 (31%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 2 QDPKMQVY--KDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEK 59
QDP ++ ++E ++ KD P A +H+LV+P I + + + ++ +EL+++M TVG+
Sbjct: 57 QDPGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKT 116
Query: 60 VIVDFAGSSKLRFRLGYHAIP--SMSHVHLHVIS 91
++ + R+G+H P S+SH+HLHV++
Sbjct: 117 ILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLA 150
>gi|4885413 histidine triad nucleotide binding protein 1 [Homo
sapiens]
Length = 126
Score = 46.2 bits (108), Expect = 1e-05
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 4 PKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVD 63
P +++D++ + D P+A H+LV+P IS + + LL H+ VG+K D
Sbjct: 28 PAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAAD 87
Query: 64 FAGSSKLRFRL--GYHAIPSMSHVHLHVI 90
+ R + G S+ HVHLHV+
Sbjct: 88 LGLNKGYRMVVNEGSDGGQSVYHVHLHVL 116
>gi|14211923 PKCI-1-related HIT protein [Homo sapiens]
Length = 163
Score = 42.4 bits (98), Expect = 2e-04
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 8 VYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV--IVDFA 65
+Y+D+Q +V +D P+A H+LV+P I + E +LL H+ V ++
Sbjct: 69 LYEDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLG 128
Query: 66 GSSKLRFRLGYHAIPSMSHVHLHVI 90
+L G S+ H+H+HV+
Sbjct: 129 DGYRLVINDGKLGAQSVYHLHIHVL 153
>gi|7661734 mRNA decapping enzyme [Homo sapiens]
Length = 337
Score = 38.1 bits (87), Expect = 0.004
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 36 ISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFD 95
I SL+ + EHL LL+++ G++ I+ R+ H +PS H+H+H + F+
Sbjct: 227 IRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFE 286
Query: 96 SP 97
+P
Sbjct: 287 AP 288
>gi|40217790 zinc finger protein 512 [Homo sapiens]
Length = 567
Score = 31.2 bits (69), Expect = 0.44
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 35 SISSLKAVAREHLE-LLKHMHTVGEKVIVDFAGSSKLRFRLG--YHAIPSMSHVHLHVIS 91
S + +AV R+ +E L KHM +++ +LR G YH + + + + +
Sbjct: 170 SCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPILKAG 229
Query: 92 QDFDSPCLKNK-----------KHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLK 140
+ D P + + + + F + V++ G+ G EL K
Sbjct: 230 DEIDEPSERERLRTVLKRLGKLRCMRESCSSSFTSIMGYLYHVRKCGK-----GAAELEK 284
Query: 141 LPLRCHECQQLLPSIPQLKEHLR 163
+ L+CH C + S L HLR
Sbjct: 285 MTLKCHHCGKPYRSKAGLAYHLR 307
>gi|13376064 zinc finger protein 408 [Homo sapiens]
Length = 720
Score = 30.0 bits (66), Expect = 0.97
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 142 PLRCHECQQLLPSIPQLKEHLRKH 165
P RC C P +P+L+ HL H
Sbjct: 523 PYRCPHCADAFPQLPELRRHLISH 546
>gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo
sapiens]
Length = 2146
Score = 29.6 bits (65), Expect = 1.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 44 REHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHA 78
REHLELL + V E + AGS R L ++A
Sbjct: 1885 REHLELLARLRGVPEAQVAQTAGSGLARLGLSWYA 1919
>gi|7662010 zinc finger protein 516 [Homo sapiens]
Length = 1163
Score = 29.3 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 126 AGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 165
+G V +G PEL C C Q LK H++KH
Sbjct: 231 SGEACVENGKPELSPGEFPCEVCGQAFSQTWFLKAHMKKH 270
>gi|169171323 PREDICTED: similar to hCG19534 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 2.2
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 81 SMSHVHLHV-ISQDFDSPCLKNK-------KHWNSF-NTEYFLESQAVIEMVQEAGRVTV 131
S S H H+ ++QDF S K W+S NTE + ++ ++ +T
Sbjct: 112 SASGKHEHINLTQDFQSSICKESLMDLSLLNKWDSIPNTEESYKCDVCEKVFHQSSALT- 170
Query: 132 RDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 165
R + P +C EC++ L H R H
Sbjct: 171 RHQRIHTREKPYKCKECEKRFSQSSSLSRHKRIH 204
>gi|169172183 PREDICTED: similar to hCG19534 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 2.2
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 81 SMSHVHLHV-ISQDFDSPCLKNK-------KHWNSF-NTEYFLESQAVIEMVQEAGRVTV 131
S S H H+ ++QDF S K W+S NTE + ++ ++ +T
Sbjct: 112 SASGKHEHINLTQDFQSSICKESLMDLSLLNKWDSIPNTEESYKCDVCEKVFHQSSALT- 170
Query: 132 RDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 165
R + P +C EC++ L H R H
Sbjct: 171 RHQRIHTREKPYKCKECEKRFSQSSSLSRHKRIH 204
>gi|169170925 PREDICTED: similar to hCG19534 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 2.2
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 81 SMSHVHLHV-ISQDFDSPCLKNK-------KHWNSF-NTEYFLESQAVIEMVQEAGRVTV 131
S S H H+ ++QDF S K W+S NTE + ++ ++ +T
Sbjct: 112 SASGKHEHINLTQDFQSSICKESLMDLSLLNKWDSIPNTEESYKCDVCEKVFHQSSALT- 170
Query: 132 RDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 165
R + P +C EC++ L H R H
Sbjct: 171 RHQRIHTREKPYKCKECEKRFSQSSSLSRHKRIH 204
>gi|239508729 PREDICTED: similar to hCG19534 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 2.2
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 81 SMSHVHLHV-ISQDFDSPCLKNK-------KHWNSF-NTEYFLESQAVIEMVQEAGRVTV 131
S S H H+ ++QDF S K W+S NTE + ++ ++ +T
Sbjct: 112 SASGKHEHINLTQDFQSSICKESLMDLSLLNKWDSIPNTEESYKCDVCEKVFHQSSALT- 170
Query: 132 RDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 165
R + P +C EC++ L H R H
Sbjct: 171 RHQRIHTREKPYKCKECEKRFSQSSSLSRHKRIH 204
>gi|16418391 zinc finger, imprinted 3 [Homo sapiens]
Length = 472
Score = 28.9 bits (63), Expect = 2.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 143 LRCHECQQLLPSIPQLKEHLRKHWTQ 168
L+C+ C++L S +L+ HLR+H Q
Sbjct: 167 LKCNACRKLFSSKSRLQSHLRRHACQ 192
>gi|46410933 zinc finger protein 528 [Homo sapiens]
Length = 628
Score = 28.9 bits (63), Expect = 2.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 142 PLRCHECQQLLPSIPQLKEHLRKH 165
P +CHEC +L S L +H R H
Sbjct: 240 PYKCHECGKLFSSNSNLSQHQRIH 263
Score = 28.5 bits (62), Expect = 2.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 142 PLRCHECQQLLPSIPQLKEHLRKH 165
P +CHEC ++ S +L +H R H
Sbjct: 268 PYKCHECDKVFRSSSKLAQHQRIH 291
>gi|66932932 promyelocytic leukemia zinc finger protein [Homo
sapiens]
Length = 673
Score = 28.5 bits (62), Expect = 2.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 145 CHECQQLLPSIPQLKEHLRKH 165
C EC + PS LK HLR H
Sbjct: 520 CSECNRTFPSHTALKRHLRSH 540
>gi|21359888 promyelocytic leukemia zinc finger protein [Homo
sapiens]
Length = 673
Score = 28.5 bits (62), Expect = 2.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 145 CHECQQLLPSIPQLKEHLRKH 165
C EC + PS LK HLR H
Sbjct: 520 CSECNRTFPSHTALKRHLRSH 540
>gi|190610008 zinc finger protein 317 [Homo sapiens]
Length = 595
Score = 28.5 bits (62), Expect = 2.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 142 PLRCHECQQLLPSIPQLKEHLRKH 165
P CH+C + LKEH+R H
Sbjct: 333 PYECHDCGKAFQHPSHLKEHVRNH 356
>gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens]
Length = 733
Score = 28.1 bits (61), Expect = 3.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 134 GMPELLKLPLRCHECQQLLPSIPQLKEHLRKHW 166
G+ ELL+ P RC C + L++H + HW
Sbjct: 499 GLGELLR-PYRCASCDKSYKDPATLRQHEKTHW 530
>gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens]
Length = 714
Score = 28.1 bits (61), Expect = 3.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 134 GMPELLKLPLRCHECQQLLPSIPQLKEHLRKHW 166
G+ ELL+ P RC C + L++H + HW
Sbjct: 480 GLGELLR-PYRCASCDKSYKDPATLRQHEKTHW 511
>gi|239751768 PREDICTED: hypothetical protein XP_002347973 isoform 1
[Homo sapiens]
Length = 479
Score = 27.7 bits (60), Expect = 4.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 142 PLRCHECQQLLPSIPQLKEHLRKH 165
P +C EC + PS QL H R H
Sbjct: 198 PYKCRECGKAFPSTAQLNLHQRIH 221
>gi|239751766 PREDICTED: hypothetical protein XP_002347974 isoform 2
[Homo sapiens]
Length = 479
Score = 27.7 bits (60), Expect = 4.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 142 PLRCHECQQLLPSIPQLKEHLRKH 165
P +C EC + PS QL H R H
Sbjct: 198 PYKCRECGKAFPSTAQLNLHQRIH 221
>gi|239751764 PREDICTED: hypothetical protein XP_002347975 isoform 3
[Homo sapiens]
Length = 543
Score = 27.7 bits (60), Expect = 4.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 142 PLRCHECQQLLPSIPQLKEHLRKH 165
P +C EC + PS QL H R H
Sbjct: 262 PYKCRECGKAFPSTAQLNLHQRIH 285
>gi|167234429 zinc finger and BTB domain containing 17 [Homo
sapiens]
Length = 803
Score = 27.7 bits (60), Expect = 4.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 142 PLRCHECQQLLPSIPQLKEHLRKH 165
PL+C EC + + LK HLR H
Sbjct: 473 PLKCRECGKQFTTSGNLKRHLRIH 496
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 27.7 bits (60), Expect = 4.8
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 104 HWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLR 163
H +SF++ E+ + ++Q R V GM ++ ++PL E Q L+ P +H
Sbjct: 705 HSSSFHSADVPEATGGLNLLQP--RPVVLQGM-QVRRVPLEIPEEQTLMEEAPPRAQHSY 761
Query: 164 KHW 166
K+W
Sbjct: 762 KYW 764
>gi|13540501 zinc finger protein 442 [Homo sapiens]
Length = 627
Score = 27.7 bits (60), Expect = 4.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 145 CHECQQLLPSIPQLKEHLRKHW 166
C EC + L S+ L H R HW
Sbjct: 602 CKECGKALSSLSSLHRHKRTHW 623
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,555,379
Number of Sequences: 37866
Number of extensions: 269091
Number of successful extensions: 3358
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3213
Number of HSP's gapped (non-prelim): 157
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.