Guide to the Human Genome
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Name: LOC100291520 Sequence: fasta or formatted (479aa) NCBI GI: 239751768
Description:

PREDICTED: hypothetical protein XP_002347973 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {543aa} PREDICTED: hypothetical protein XP_002347975 isoform 3
alt mRNA {479aa} PREDICTED: hypothetical protein XP_002347974 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         17           1
 C cysteine            7.3         35           1
 D aspartate           1.3          6           1
 E glutamate          11.3         54           1
 F phenylalanine       3.5         17           1
 G glycine             6.7         32           3
 H histidine           8.4         40           2
 I isoleucine          5.0         24           2
 K lysine             10.6         51           2
 L leucine             3.8         18           1
 M methionine          0.6          3           1
 N asparagine          2.1         10           2
 P proline             4.2         20           1
 Q glutamine           6.7         32           2
 R arginine            7.9         38           2
 S serine              7.3         35           3
 T threonine           5.0         24           1
 V valine              1.7          8           1
 W tryptophan          0.6          3           1
 Y tyrosine            2.5         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347973 isofor... 
LOC100291520          1.000   PREDICTED: hypothetical protein XP_002347974 isofor...
LOC100291520          1.000   PREDICTED: hypothetical protein XP_002347975 isofor...
ZNF420                0.515   zinc finger protein 420 
ZNF345                0.485   zinc finger protein 345 
ZNF571                0.482   zinc finger protein 571 
ZNF283                0.471   zinc finger protein 283 
ZNF546                0.466   zinc finger protein 546 
ZFP14                 0.463   zinc finger protein 14-like 
ZNF135                0.461   zinc finger protein 135 
ZNF93                 0.460   zinc finger protein 93 
LOC647678             0.459   PREDICTED: similar to zinc finger protein 347 [Homo...
ZNF790                0.459   zinc finger protein 790 
LOC647678             0.458   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.458   PREDICTED: hypothetical protein XP_002343697 
ZNF780B               0.456   zinc finger protein 780B 
ZNF23                 0.455   zinc finger protein 23 
ZNF780A               0.454   zinc finger protein 780A isoform b 
ZNF780A               0.454   zinc finger protein 780A isoform b 
ZNF780A               0.454   zinc finger protein 780A isoform a 
ZNF665                0.454   zinc finger protein 665 
ZNF30                 0.452   zinc finger protein 30 isoform b 
ZNF30                 0.452   zinc finger protein 30 isoform a 
ZNF30                 0.452   zinc finger protein 30 isoform a 
ZNF429                0.449   zinc finger protein 429 
ZNF347                0.448   zinc finger protein 347 
ZNF184                0.447   zinc finger protein 184 
ZFP30                 0.447   zinc finger protein 30 homolog 
ZNF66                 0.447   PREDICTED: zinc finger protein 66 
ZNF66                 0.447   PREDICTED: zinc finger protein 66 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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