Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131257 Sequence: fasta or formatted (425aa) NCBI GI: 169171323
Description:

PREDICTED: similar to hCG19534

Not currently referenced in the text

Other entries for this name:
alt prot {425aa} PREDICTED: similar to hCG19534
alt prot {425aa} PREDICTED: similar to hCG19534
alt prot {425aa} PREDICTED: similar to hCG19534
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.4         10           1
 C cysteine            4.5         19           1
 D aspartate           5.6         24           2
 E glutamate           8.7         37           2
 F phenylalanine       4.0         17           1
 G glycine             3.1         13           2
 H histidine           6.6         28           2
 I isoleucine          5.6         24           2
 K lysine              9.6         41           2
 L leucine             6.4         27           2
 M methionine          1.4          6           1
 N asparagine          4.2         18           2
 P proline             2.4         10           1
 Q glutamine           6.1         26           2
 R arginine            5.4         23           1
 S serine             12.2         52           3
 T threonine           5.2         22           1
 V valine              3.1         13           1
 W tryptophan          0.2          1           1
 Y tyrosine            3.3         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG19534 
LOC100131257          0.993   PREDICTED: similar to hCG19534 
LOC100131257          0.993   PREDICTED: similar to hCG19534 
LOC100131257          0.993   PREDICTED: similar to hCG19534 
ZNF655                0.775   zinc finger protein 655 isoform f 
ZNF655                0.775   zinc finger protein 655 isoform f 
ZNF655                0.775   zinc finger protein 655 isoform a 
ZNF655                0.775   zinc finger protein 655 isoform a 
ZNF420                0.291   zinc finger protein 420 
ZNF429                0.290   zinc finger protein 429 
ZNF135                0.290   zinc finger protein 135 
ZNF347                0.286   zinc finger protein 347 
ZFP2                  0.286   zinc finger protein 2 homolog 
ZNF167                0.285   zinc finger protein 167 isoform 1 
ZNF16                 0.283   zinc finger protein 16 
ZNF16                 0.283   zinc finger protein 16 
ZNF665                0.279   zinc finger protein 665 
ZNF658                0.278   zinc finger protein 658 
ZNF28                 0.277   zinc finger protein 28 
ZNF583                0.277   zinc finger protein 583 
ZNF583                0.277   zinc finger protein 583 
ZNF583                0.277   zinc finger protein 583 
LOC400713             0.277   zinc finger protein LOC400713 
ZNF93                 0.277   zinc finger protein 93 
ZNF184                0.276   zinc finger protein 184 
ZNF257                0.275   zinc finger protein 257 
ZNF470                0.275   zinc finger protein 470 
ZNF415                0.272   zinc finger protein 415 isoform 1 
ZNF415                0.272   zinc finger protein 415 isoform 2 
LOC100292052          0.272   PREDICTED: similar to hCG1773661 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press