Guide to the Human Genome
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Name: LOC100291520 Sequence: fasta or formatted (543aa) NCBI GI: 239751764
Description:

PREDICTED: hypothetical protein XP_002347975 isoform 3

Not currently referenced in the text

Other entries for this name:
alt prot {479aa} PREDICTED: hypothetical protein XP_002347974 isoform 2
alt prot {479aa} PREDICTED: hypothetical protein XP_002347973 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         19           1
 C cysteine            6.6         36           1
 D aspartate           1.8         10           1
 E glutamate          11.0         60           1
 F phenylalanine       3.5         19           1
 G glycine             6.4         35           3
 H histidine           7.6         41           2
 I isoleucine          4.8         26           2
 K lysine             10.7         58           2
 L leucine             5.2         28           2
 M methionine          0.9          5           1
 N asparagine          2.4         13           2
 P proline             4.1         22           1
 Q glutamine           6.4         35           2
 R arginine            7.2         39           2
 S serine              7.2         39           3
 T threonine           4.6         25           1
 V valine              2.4         13           2
 W tryptophan          0.9          5           1
 Y tyrosine            2.8         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347975 isofor... 
LOC100291520          0.887   PREDICTED: hypothetical protein XP_002347973 isofor...
LOC100291520          0.887   PREDICTED: hypothetical protein XP_002347974 isofor...
ZNF420                0.494   zinc finger protein 420 
ZNF546                0.486   zinc finger protein 546 
ZNF780B               0.475   zinc finger protein 780B 
ZNF790                0.475   zinc finger protein 790 
ZNF780A               0.473   zinc finger protein 780A isoform b 
ZNF780A               0.473   zinc finger protein 780A isoform b 
ZFP14                 0.471   zinc finger protein 14-like 
ZNF780A               0.470   zinc finger protein 780A isoform a 
ZFP30                 0.466   zinc finger protein 30 homolog 
ZNF30                 0.466   zinc finger protein 30 isoform b 
ZNF571                0.464   zinc finger protein 571 
ZNF565                0.463   zinc finger protein 565 
ZNF565                0.463   zinc finger protein 565 
ZNF30                 0.461   zinc finger protein 30 isoform a 
ZNF30                 0.461   zinc finger protein 30 isoform a 
ZNF283                0.455   zinc finger protein 283 
ZNF85                 0.454   zinc finger protein 85 
ZNF461                0.450   gonadotropin inducible transcription repressor 1 [Ho...
ZNF429                0.449   zinc finger protein 429 
ZNF66                 0.447   PREDICTED: zinc finger protein 66 
ZNF66                 0.447   PREDICTED: zinc finger protein 66 
ZNF66                 0.447   PREDICTED: zinc finger protein 66 
ZNF184                0.446   zinc finger protein 184 
ZFP82                 0.446   zinc finger protein 82 homolog 
ZNF708                0.445   zinc finger protein 708 
ZNF540                0.443   zinc finger protein 540 
ZNF470                0.442   zinc finger protein 470 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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