Guide to the Human Genome
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Name: DCPS Sequence: fasta or formatted (337aa) NCBI GI: 7661734
Description:

mRNA decapping enzyme

Referenced in:

RNases and RNA Stability

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         24           2
 C cysteine            0.9          3           1
 D aspartate           6.8         23           2
 E glutamate           7.4         25           2
 F phenylalanine       3.3         11           1
 G glycine             5.3         18           1
 H histidine           4.5         15           1
 I isoleucine          4.7         16           2
 K lysine              4.5         15           2
 L leucine            13.9         47           2
 M methionine          0.6          2           1
 N asparagine          3.0         10           1
 P proline             5.3         18           2
 Q glutamine           6.8         23           3
 R arginine            7.1         24           2
 S serine              4.5         15           1
 T threonine           4.2         14           2
 V valine              5.6         19           2
 W tryptophan          0.6          2           1
 Y tyrosine            3.9         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mRNA decapping enzyme 
APTX                  0.020   aprataxin isoform a 
APTX                  0.020   aprataxin isoform c 
APTX                  0.020   aprataxin isoform d 
APTX                  0.020   aprataxin isoform b 
APTX                  0.020   aprataxin isoform d 
MDN1                  0.018   MDN1, midasin homolog 
ROBO1                 0.014   roundabout 1 isoform d 
ROBO1                 0.014   roundabout 1 isoform c 
ROBO1                 0.014   roundabout 1 isoform b 
LOC642132             0.014   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.014   PREDICTED: similar to roundabout 1 isoform 2 
ROBO1                 0.014   roundabout 1 isoform a 
LOC100129053          0.009   PREDICTED: hypothetical protein 
LOC100129053          0.009   PREDICTED: hypothetical protein 
LOC100129053          0.009   PREDICTED: hypothetical protein 
RYR1                  0.009   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.009   skeletal muscle ryanodine receptor isoform 1 
DHTKD1                0.008   dehydrogenase E1 and transketolase domain containing...
MCF2L2                0.006   Rho family guanine-nucleotide exchange factor 
ALDH9A1               0.006   aldehyde dehydrogenase 9A1 
IQCH                  0.005   IQ motif containing H isoform 1 
IQCH                  0.005   IQ motif containing H isoform 2 
CYP26B1               0.005   cytochrome P450, family 26, subfamily b, polypeptide ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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