Guide to the Human Genome
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Name: LOC100131257 Sequence: fasta or formatted (425aa) NCBI GI: 239508729
Description:

PREDICTED: similar to hCG19534

Not currently referenced in the text

Other entries for this name:
alt mRNA {425aa} PREDICTED: similar to hCG19534
alt prot {425aa} PREDICTED: similar to hCG19534
alt mRNA {425aa} PREDICTED: similar to hCG19534
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.4         10           1
 C cysteine            4.5         19           1
 D aspartate           5.9         25           2
 E glutamate           8.7         37           2
 F phenylalanine       4.0         17           1
 G glycine             3.1         13           2
 H histidine           6.4         27           2
 I isoleucine          5.6         24           2
 K lysine              9.6         41           2
 L leucine             6.4         27           2
 M methionine          1.4          6           1
 N asparagine          4.0         17           2
 P proline             2.4         10           1
 Q glutamine           6.1         26           2
 R arginine            5.6         24           1
 S serine             12.2         52           3
 T threonine           4.9         21           1
 V valine              3.1         13           1
 W tryptophan          0.2          1           1
 Y tyrosine            3.5         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG19534 
LOC100131257          1.000   PREDICTED: similar to hCG19534 
LOC100131257          1.000   PREDICTED: similar to hCG19534 
LOC100131257          0.993   PREDICTED: similar to hCG19534 
ZNF655                0.779   zinc finger protein 655 isoform f 
ZNF655                0.779   zinc finger protein 655 isoform f 
ZNF655                0.779   zinc finger protein 655 isoform a 
ZNF655                0.779   zinc finger protein 655 isoform a 
ZNF429                0.295   zinc finger protein 429 
ZNF420                0.293   zinc finger protein 420 
ZNF135                0.291   zinc finger protein 135 
ZNF347                0.286   zinc finger protein 347 
ZFP2                  0.286   zinc finger protein 2 homolog 
ZNF167                0.285   zinc finger protein 167 isoform 1 
ZNF583                0.283   zinc finger protein 583 
ZNF583                0.283   zinc finger protein 583 
ZNF583                0.283   zinc finger protein 583 
ZNF93                 0.281   zinc finger protein 93 
ZNF184                0.281   zinc finger protein 184 
ZNF28                 0.281   zinc finger protein 28 
ZNF16                 0.279   zinc finger protein 16 
ZNF16                 0.279   zinc finger protein 16 
ZNF658                0.279   zinc finger protein 658 
ZNF665                0.279   zinc finger protein 665 
ZNF257                0.278   zinc finger protein 257 
LOC400713             0.276   zinc finger protein LOC400713 
LOC100292052          0.275   PREDICTED: similar to hCG1773661 
LOC100287226          0.275   PREDICTED: similar to hCG1773661 
LOC100287226          0.275   PREDICTED: hypothetical protein XP_002343677 
ZNF85                 0.275   zinc finger protein 85 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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