APTX 24680

Name: APTX	Sequence: fasta or formatted (168aa)		NCBI GI: 28329427
Description: aprataxin isoform d		Referenced in: DNases, Recombination, and DNA Repair
Other entries for this name: alt prot [306aa] aprataxin isoform b alt prot [254aa] aprataxin isoform c alt prot [342aa] aprataxin isoform a alt mRNA [168aa] aprataxin isoform d
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.2 7 1 C cysteine 1.8 3 1 D aspartate 4.2 7 1 E glutamate 6.5 11 1 F phenylalanine 3.0 5 1 G glycine 3.0 5 1 H histidine 7.1 12 1 I isoleucine 4.2 7 1 K lysine 8.9 15 2 L leucine 11.3 19 2 M methionine 3.6 6 1 N asparagine 1.8 3 1 P proline 5.4 9 1 Q glutamine 6.0 10 2 R arginine 4.8 8 1 S serine 7.1 12 2 T threonine 3.0 5 1 V valine 8.9 15 3 W tryptophan 2.4 4 1 Y tyrosine 3.0 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 aprataxin isoform d APTX 1.000 aprataxin isoform a APTX 1.000 aprataxin isoform c APTX 1.000 aprataxin isoform d APTX 0.678 aprataxin isoform b HINT3 0.104 histidine triad nucleotide binding protein 3 HINT1 0.064 histidine triad nucleotide binding protein 1 HINT2 0.052 PKCI-1-related HIT protein DCPS 0.040 mRNA decapping enzyme ZNF512 0.018 zinc finger protein 512 ZNF408 0.015 zinc finger protein 408 ABCA7 0.015 ATP-binding cassette, sub-family A, member 7 ZNF516 0.012 zinc finger protein 516 LOC100131257 0.012 PREDICTED: similar to hCG19534 LOC100131257 0.012 PREDICTED: similar to hCG19534 LOC100131257 0.012 PREDICTED: similar to hCG19534 LOC100131257 0.012 PREDICTED: similar to hCG19534 ZIM3 0.012 zinc finger, imprinted 3 ZNF528 0.012 zinc finger protein 528 ZBTB16 0.009 promyelocytic leukemia zinc finger protein ZBTB16 0.009 promyelocytic leukemia zinc finger protein ZNF317 0.009 zinc finger protein 317 HIC1 0.009 hypermethylated in cancer 1 isoform 2 HIC1 0.009 hypermethylated in cancer 1 isoform 1 LOC100291520 0.009 PREDICTED: hypothetical protein XP_002347973 isofor... LOC100291520 0.009 PREDICTED: hypothetical protein XP_002347974 isofor... LOC100291520 0.009 PREDICTED: hypothetical protein XP_002347975 isofor... ZBTB17 0.009 zinc finger and BTB domain containing 17 PCNXL3 0.009 pecanex-like 3 ZNF442 0.009 zinc finger protein 442 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.