APTX 24681

Name: APTX	Sequence: fasta or formatted (306aa)		NCBI GI: 28329430
Description: aprataxin isoform b		Referenced in: DNases, Recombination, and DNA Repair
Other entries for this name: alt prot [168aa] aprataxin isoform d alt prot [254aa] aprataxin isoform c alt prot [342aa] aprataxin isoform a alt prot [168aa] aprataxin isoform d
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.2 13 2 C cysteine 1.6 5 1 D aspartate 4.6 14 1 E glutamate 7.2 22 3 F phenylalanine 2.3 7 1 G glycine 5.9 18 1 H histidine 4.6 14 1 I isoleucine 4.6 14 1 K lysine 9.8 30 2 L leucine 7.8 24 2 M methionine 2.6 8 2 N asparagine 3.6 11 1 P proline 4.6 14 1 Q glutamine 5.6 17 2 R arginine 5.2 16 1 S serine 8.8 27 2 T threonine 2.6 8 1 V valine 9.8 30 3 W tryptophan 2.0 6 1 Y tyrosine 2.6 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 aprataxin isoform b APTX 0.950 aprataxin isoform a APTX 0.656 aprataxin isoform c APTX 0.368 aprataxin isoform d APTX 0.368 aprataxin isoform d PNKP 0.075 polynucleotide kinase 3' phosphatase HINT3 0.057 histidine triad nucleotide binding protein 3 HINT1 0.037 histidine triad nucleotide binding protein 1 HINT2 0.035 PKCI-1-related HIT protein DCPS 0.022 mRNA decapping enzyme APLF 0.015 aprataxin and PNKP like factor MKI67 0.013 antigen identified by monoclonal antibody Ki-67 iso... HRNR 0.010 hornerin ZCCHC7 0.008 zinc finger, CCHC domain containing 7 RINL 0.008 Ras and Rab interactor-like HMCN1 0.008 hemicentin 1 ABCA7 0.008 ATP-binding cassette, sub-family A, member 7 CCT6B 0.008 chaperonin containing TCP1, subunit 6B DAGLB 0.008 diacylglycerol lipase, beta isoform 2 DAGLB 0.008 diacylglycerol lipase, beta isoform 1 HYDIN 0.008 hydrocephalus inducing isoform a LARP7 0.007 La ribonucleoprotein domain family, member 7 LARP7 0.007 La ribonucleoprotein domain family, member 7 THAP1 0.005 THAP domain containing, apoptosis associated protein ... MYH10 0.005 myosin, heavy polypeptide 10, non-muscle WDR66 0.005 WD repeat domain 66 CXXC1 0.005 CXXC finger 1 (PHD domain) isoform 1 CXXC1 0.005 CXXC finger 1 (PHD domain) isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.