APTX 24683

Name: APTX	Sequence: fasta or formatted (342aa)		NCBI GI: 28329436
Description: aprataxin isoform a		Referenced in: DNases, Recombination, and DNA Repair
Other entries for this name: alt prot [168aa] aprataxin isoform d alt prot [306aa] aprataxin isoform b alt prot [254aa] aprataxin isoform c alt prot [168aa] aprataxin isoform d
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.4 15 2 C cysteine 2.0 7 1 D aspartate 4.1 14 1 E glutamate 7.6 26 3 F phenylalanine 1.8 6 1 G glycine 5.8 20 1 H histidine 5.0 17 1 I isoleucine 4.7 16 1 K lysine 9.6 33 2 L leucine 9.1 31 2 M methionine 2.6 9 2 N asparagine 2.6 9 1 P proline 5.3 18 1 Q glutamine 6.4 22 2 R arginine 5.6 19 1 S serine 7.3 25 2 T threonine 2.9 10 1 V valine 9.1 31 3 W tryptophan 1.8 6 1 Y tyrosine 2.3 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 aprataxin isoform a APTX 0.845 aprataxin isoform b APTX 0.738 aprataxin isoform c APTX 0.482 aprataxin isoform d APTX 0.482 aprataxin isoform d PNKP 0.067 polynucleotide kinase 3' phosphatase HINT3 0.050 histidine triad nucleotide binding protein 3 HINT1 0.033 histidine triad nucleotide binding protein 1 HINT2 0.031 PKCI-1-related HIT protein DCPS 0.019 mRNA decapping enzyme APLF 0.013 aprataxin and PNKP like factor MKI67 0.012 antigen identified by monoclonal antibody Ki-67 iso... HRNR 0.009 hornerin ZNF512 0.009 zinc finger protein 512 ZCCHC7 0.007 zinc finger, CCHC domain containing 7 RINL 0.007 Ras and Rab interactor-like ZNF408 0.007 zinc finger protein 408 HMCN1 0.007 hemicentin 1 ABCA7 0.007 ATP-binding cassette, sub-family A, member 7 CCT6B 0.007 chaperonin containing TCP1, subunit 6B DAGLB 0.007 diacylglycerol lipase, beta isoform 2 DAGLB 0.007 diacylglycerol lipase, beta isoform 1 HYDIN 0.007 hydrocephalus inducing isoform a ZNF516 0.006 zinc finger protein 516 LOC100131257 0.006 PREDICTED: similar to hCG19534 LOC100131257 0.006 PREDICTED: similar to hCG19534 LOC100131257 0.006 PREDICTED: similar to hCG19534 LOC100131257 0.006 PREDICTED: similar to hCG19534 LARP7 0.006 La ribonucleoprotein domain family, member 7 LARP7 0.006 La ribonucleoprotein domain family, member 7 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.