APTX 24682

Name: APTX	Sequence: fasta or formatted (254aa)		NCBI GI: 28329433
Description: aprataxin isoform c		Referenced in: DNases, Recombination, and DNA Repair
Other entries for this name: alt prot [168aa] aprataxin isoform d alt prot [306aa] aprataxin isoform b alt prot [342aa] aprataxin isoform a alt prot [168aa] aprataxin isoform d
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.1 13 2 C cysteine 1.6 4 1 D aspartate 3.9 10 1 E glutamate 8.7 22 3 F phenylalanine 2.4 6 1 G glycine 5.5 14 1 H histidine 5.5 14 1 I isoleucine 4.3 11 1 K lysine 9.4 24 2 L leucine 9.8 25 2 M methionine 2.8 7 1 N asparagine 2.8 7 1 P proline 5.5 14 1 Q glutamine 5.1 13 2 R arginine 4.7 12 1 S serine 8.3 21 2 T threonine 2.8 7 1 V valine 7.1 18 3 W tryptophan 2.0 5 1 Y tyrosine 2.8 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 aprataxin isoform c APTX 1.000 aprataxin isoform a APTX 0.790 aprataxin isoform b APTX 0.653 aprataxin isoform d APTX 0.653 aprataxin isoform d HINT3 0.068 histidine triad nucleotide binding protein 3 HINT1 0.044 histidine triad nucleotide binding protein 1 HINT2 0.042 PKCI-1-related HIT protein DCPS 0.026 mRNA decapping enzyme HRNR 0.012 hornerin ZNF512 0.012 zinc finger protein 512 ZNF408 0.010 zinc finger protein 408 ABCA7 0.010 ATP-binding cassette, sub-family A, member 7 ZNF516 0.008 zinc finger protein 516 LOC100131257 0.008 PREDICTED: similar to hCG19534 LOC100131257 0.008 PREDICTED: similar to hCG19534 LOC100131257 0.008 PREDICTED: similar to hCG19534 LOC100131257 0.008 PREDICTED: similar to hCG19534 LARP7 0.008 La ribonucleoprotein domain family, member 7 LARP7 0.008 La ribonucleoprotein domain family, member 7 ZIM3 0.008 zinc finger, imprinted 3 ZNF528 0.008 zinc finger protein 528 ZBTB16 0.006 promyelocytic leukemia zinc finger protein ZBTB16 0.006 promyelocytic leukemia zinc finger protein MYH10 0.006 myosin, heavy polypeptide 10, non-muscle WDR66 0.006 WD repeat domain 66 ZNF317 0.006 zinc finger protein 317 HIC1 0.006 hypermethylated in cancer 1 isoform 2 HIC1 0.006 hypermethylated in cancer 1 isoform 1 HYDIN 0.006 hydrocephalus inducing isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.