Guide to the Human Genome
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Name: ZIM3 Sequence: fasta or formatted (472aa) NCBI GI: 16418391
Description:

zinc finger, imprinted 3

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2         15           1
 C cysteine            5.3         25           1
 D aspartate           3.4         16           2
 E glutamate           7.2         34           4
 F phenylalanine       3.6         17           2
 G glycine             6.8         32           2
 H histidine           5.5         26           1
 I isoleucine          4.0         19           1
 K lysine             12.7         60           2
 L leucine             6.1         29           1
 M methionine          0.6          3           1
 N asparagine          5.9         28           2
 P proline             3.0         14           1
 Q glutamine           6.8         32           2
 R arginine            5.3         25           2
 S serine              7.4         35           2
 T threonine           4.9         23           2
 V valine              4.0         19           1
 W tryptophan          1.1          5           1
 Y tyrosine            3.2         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, imprinted 3 
ZNF568                0.459   zinc finger protein 568 
ZNF569                0.457   zinc finger protein 569 
ZNF300                0.439   zinc finger protein 300 
ZNF182                0.417   zinc finger protein 21 isoform 2 
ZNF182                0.416   zinc finger protein 21 isoform 1 
LOC100287429          0.413   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.413   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.413   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.413   zinc finger protein 84 
ZNF84                 0.413   zinc finger protein 84 
ZNF34                 0.404   zinc finger protein 34 
ZNF157                0.397   zinc finger protein 157 
ZNF85                 0.396   zinc finger protein 85 
ZNF12                 0.396   zinc finger protein 12 isoform b 
LOC646864             0.394   PREDICTED: similar to hCG36734 
LOC646864             0.394   PREDICTED: similar to hCG36734 
LOC646864             0.394   PREDICTED: similar to hCG36734 
ZNF25                 0.388   zinc finger protein 25 
ZNF93                 0.387   zinc finger protein 93 
ZNF626                0.386   zinc finger protein 626 isoform 1 
ZNF66                 0.386   PREDICTED: zinc finger protein 66 
ZNF66                 0.386   PREDICTED: zinc finger protein 66 
ZNF66                 0.386   PREDICTED: zinc finger protein 66 
ZNF630                0.385   zinc finger protein 630 
ZNF253                0.384   zinc finger protein 253 
ZNF726                0.383   PREDICTED: zinc finger protein 726 
ZNF726                0.383   PREDICTED: zinc finger protein 726 
ZNF726                0.383   PREDICTED: zinc finger protein 726 
ZNF665                0.382   zinc finger protein 665 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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