Guide to the Human Genome
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Name: C2orf68 Sequence: fasta or formatted (166aa) NCBI GI: 89191830
Description:

hypothetical protein LOC388969

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         10           2
 C cysteine            1.8          3           2
 D aspartate           6.6         11           2
 E glutamate           8.4         14           2
 F phenylalanine       1.2          2           1
 G glycine             7.2         12           2
 H histidine           6.6         11           2
 I isoleucine          3.0          5           1
 K lysine              6.6         11           2
 L leucine             5.4          9           1
 M methionine          1.8          3           1
 N asparagine          1.8          3           1
 P proline             9.6         16           2
 Q glutamine           4.8          8           1
 R arginine            9.6         16           3
 S serine              7.8         13           4
 T threonine           2.4          4           1
 V valine              6.0         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC388969 
PPIG                  0.018   peptidylprolyl isomerase G 
LOC100130472          0.015   PREDICTED: hypothetical protein 
LOC100130472          0.015   PREDICTED: hypothetical protein 
LOC100130472          0.015   PREDICTED: hypothetical protein 
CDC2L5                0.015   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.015   cell division cycle 2-like 5 isoform 2 
SBF1                  0.015   SET binding factor 1 
LAT                   0.015   linker for activation of T cells isoform d 
LAT                   0.015   linker for activation of T cells isoform b 
LOC390595             0.012   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.012   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.012   PREDICTED: hypothetical protein 
NAP5                  0.012   Nck-associated protein 5 isoform 1 
MAP1A                 0.012   microtubule-associated protein 1A 
PCM1                  0.012   pericentriolar material 1 
KIAA1853              0.012   KIAA1853 protein 
GRM5                  0.009   glutamate receptor, metabotropic 5 isoform a precur...
GRM5                  0.009   glutamate receptor, metabotropic 5 isoform b precurso...
PCNXL3                0.009   pecanex-like 3 
AEBP2                 0.009   AE binding protein 2 isoform b 
SRRM1                 0.009   serine/arginine repetitive matrix 1 
AEBP2                 0.009   AE binding protein 2 isoform a 
RBM17                 0.009   RNA binding motif protein 17 
RBM17                 0.009   RNA binding motif protein 17 
TERF2                 0.009   telomeric repeat binding factor 2 
COL17A1               0.009   alpha 1 type XVII collagen 
LOC100289135          0.009   hypothetical protein LOC100289135 
LOC100293333          0.009   PREDICTED: similar to hCG1802898 
LOC100290603          0.009   PREDICTED: hypothetical protein XP_002346928 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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