Guide to the Human Genome
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Name: LOC100130472 Sequence: fasta or formatted (370aa) NCBI GI: 169168103
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {290aa} PREDICTED: hypothetical protein
alt prot {328aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         24           2
 C cysteine            4.3         16           2
 D aspartate           4.1         15           2
 E glutamate           6.2         23           3
 F phenylalanine       3.0         11           2
 G glycine             9.2         34           3
 H histidine           1.9          7           1
 I isoleucine          1.9          7           2
 K lysine              3.2         12           2
 L leucine            11.4         42           2
 M methionine          0.8          3           1
 N asparagine          1.1          4           1
 P proline             8.9         33           1
 Q glutamine           5.1         19           3
 R arginine            5.1         19           1
 S serine             11.1         41           2
 T threonine           7.3         27           2
 V valine              4.3         16           1
 W tryptophan          3.2         12           1
 Y tyrosine            1.4          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130472          0.865   PREDICTED: hypothetical protein 
LOC100130472          0.701   PREDICTED: hypothetical protein 
HAUS8                 0.013   sarcoma antigen NY-SAR-48 isoform b 
HAUS8                 0.013   sarcoma antigen NY-SAR-48 isoform a 
RIN1                  0.011   ras inhibitor RIN1 
BCL6B                 0.009   B-cell CLL/lymphoma 6, member B (zinc finger protein...
C16orf59              0.009   hypothetical protein LOC80178 
METTL1                0.008   methyltransferase-like protein 1 isoform c 
PDZRN3                0.008   PDZ domain containing ring finger 3 
JAZF1                 0.007   JAZF zinc finger 1 
NFAT5                 0.007   nuclear factor of activated T-cells 5 isoform a [Hom...
NFAT5                 0.007   nuclear factor of activated T-cells 5 isoform c [Homo...
NFAT5                 0.007   nuclear factor of activated T-cells 5 isoform d [Ho...
NFAT5                 0.007   nuclear factor of activated T-cells 5 isoform b [Ho...
NFAT5                 0.007   nuclear factor of activated T-cells 5 isoform a [Hom...
RASL10A               0.007   RAS-related on chromosome 22 isoform a 
C2orf68               0.007   hypothetical protein LOC388969 
AFTPH                 0.007   aftiphilin protein isoform a 
TREML2                0.007   triggering receptor expressed on myeloid cells-like...
PSD4                  0.007   pleckstrin and Sec7 domain containing 4 
ADAMTS13              0.005   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.005   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.005   ADAM metallopeptidase with thrombospondin type 1 mot...
SH3TC1                0.005   SH3 domain and tetratricopeptide repeats 1 
SENP3                 0.005   SUMO1/sentrin/SMT3 specific protease 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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