Search of human proteins with 89035135

Search of human proteins with 89035135

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
         (321 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl...   672   0.0  
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl...   672   0.0  
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc...   670   0.0  
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ...   573   e-164
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   556   e-159
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   556   e-159
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b...   549   e-156
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap...   395   e-110
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor...   364   e-101
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform...   364   e-101
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi...   271   6e-73
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...   179   4e-45
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ...   178   7e-45
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ...   169   2e-42
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo...   162   4e-40
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ...   155   3e-38
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ...   152   5e-37
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ...   151   9e-37
gi|20373175 musashi 2 isoform a [Homo sapiens]                        145   5e-35
gi|4505255 musashi 1 [Homo sapiens]                                   140   2e-33
gi|25121993 musashi 2 isoform b [Homo sapiens]                        140   2e-33
gi|239747524 PREDICTED: similar to serum response factor-related...   132   4e-31
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]         125   5e-29
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]         125   5e-29
gi|6678271 TAR DNA binding protein [Homo sapiens]                     105   5e-23
gi|195972866 keratin 10 [Homo sapiens]                                 79   5e-15
gi|4502847 cold inducible RNA binding protein [Homo sapiens]           77   2e-14
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]           72   7e-13
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]          72   7e-13
gi|55956899 keratin 9 [Homo sapiens]                                   70   2e-12

>gi|89035135 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  672 bits (1734), Expect = 0.0
 Identities = 321/321 (100%), Positives = 321/321 (100%)

Query: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
           MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV
Sbjct: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60

Query: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
           PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP
Sbjct: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120

Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
           LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180

Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN 240
           LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN 240

Query: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY 300
           GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY
Sbjct: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY 300

Query: 301 GGSSSSSSYGSGRRFQLGNKT 321
           GGSSSSSSYGSGRRFQLGNKT
Sbjct: 301 GGSSSSSSYGSGRRFQLGNKT 321


>gi|89034333 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  672 bits (1734), Expect = 0.0
 Identities = 321/321 (100%), Positives = 321/321 (100%)

Query: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
           MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV
Sbjct: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60

Query: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
           PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP
Sbjct: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120

Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
           LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180

Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN 240
           LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN 240

Query: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY 300
           GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY
Sbjct: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY 300

Query: 301 GGSSSSSSYGSGRRFQLGNKT 321
           GGSSSSSSYGSGRRFQLGNKT
Sbjct: 301 GGSSSSSSYGSGRRFQLGNKT 321


>gi|169203146 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  670 bits (1728), Expect = 0.0
 Identities = 320/321 (99%), Positives = 320/321 (99%)

Query: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
           MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV
Sbjct: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60

Query: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
           PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP
Sbjct: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120

Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
           LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180

Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN 240
           LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGG GGSHGGSADGYN
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYN 240

Query: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY 300
           GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY
Sbjct: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY 300

Query: 301 GGSSSSSSYGSGRRFQLGNKT 321
           GGSSSSSSYGSGRRFQLGNKT
Sbjct: 301 GGSSSSSSYGSGRRFQLGNKT 321


>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
           [Homo sapiens]
          Length = 320

 Score =  573 bits (1478), Expect = e-164
 Identities = 279/320 (87%), Positives = 291/320 (90%), Gaps = 5/320 (1%)

Query: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
           MSKSESPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
            Y TVEEVDAAMNARPHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH 
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
           LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235
           LSKQ+MASA SSQR RSGSGNFGGGRGGGF GNDNFG GGNFSG GGFGGS     +GGS
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240

Query: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295
            DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S  YGGGGQYFAKP+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 300

Query: 296 NQGGYGGSSSSSSYGSGRRF 315
           NQGGYGGSSSSSSYGSGRRF
Sbjct: 301 NQGGYGGSSSSSSYGSGRRF 320


>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  556 bits (1434), Expect = e-159
 Identities = 272/320 (85%), Positives = 283/320 (88%), Gaps = 5/320 (1%)

Query: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
           MSKS SPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
            Y TVEEVDAAMN  PHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH 
Sbjct: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
           LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH V GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180

Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235
           L KQ+MASA SSQR R GSGNFGGGRG GF GNDNFG GGNFSG GGFGGS     +GGS
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240

Query: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295
            DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S  YGGGGQYFAKPQ
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300

Query: 296 NQGGYGGSSSSSSYGSGRRF 315
           NQGGYG SSSSSSYGSGRRF
Sbjct: 301 NQGGYGVSSSSSSYGSGRRF 320


>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  556 bits (1434), Expect = e-159
 Identities = 272/320 (85%), Positives = 283/320 (88%), Gaps = 5/320 (1%)

Query: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
           MSKS SPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
            Y TVEEVDAAMN  PHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH 
Sbjct: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
           LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH V GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180

Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235
           L KQ+MASA SSQR R GSGNFGGGRG GF GNDNFG GGNFSG GGFGGS     +GGS
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240

Query: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295
            DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S  YGGGGQYFAKPQ
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300

Query: 296 NQGGYGGSSSSSSYGSGRRF 315
           NQGGYG SSSSSSYGSGRRF
Sbjct: 301 NQGGYGVSSSSSSYGSGRRF 320


>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
           [Homo sapiens]
          Length = 372

 Score =  549 bits (1415), Expect = e-156
 Identities = 279/372 (75%), Positives = 291/372 (78%), Gaps = 57/372 (15%)

Query: 1   MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
           MSKSESPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 61  PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
            Y TVEEVDAAMNARPHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH 
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
           LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235
           LSKQ+MASA SSQR RSGSGNFGGGRGGGF GNDNFG GGNFSG GGFGGS     +GGS
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240

Query: 236 ADGYNGFGND-------------------------------------------------- 245
            DGYNGFGND                                                  
Sbjct: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300

Query: 246 --GKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGS 303
             G NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S  YGGGGQYFAKP+NQGGYGGS
Sbjct: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360

Query: 304 SSSSSYGSGRRF 315
           SSSSSYGSGRRF
Sbjct: 361 SSSSSYGSGRRF 372


>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
           sapiens]
          Length = 378

 Score =  395 bits (1016), Expect = e-110
 Identities = 210/344 (61%), Positives = 238/344 (69%), Gaps = 38/344 (11%)

Query: 3   KSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPY 62
           +   PKEP+QLRKLFIGGL FET+D+SLR H E+WGTLT+CVVMRDP T RSRGFGFV Y
Sbjct: 24  EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83

Query: 63  VTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLR 122
             VEEVDAAM ARPHK+ GRVVEPK AVSREDS +PGA+LTVKKIFVGGIKEDTEE+ LR
Sbjct: 84  SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143

Query: 123 DYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALS 182
           DY+E+YGK E IE+M D+ SGKKR FAFVTFD+HD+ DKIV+QKYH +NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203

Query: 183 KQKMASAPSSQRSRSGSGNFGGGRGGGF-SGNDNFGHGGNFSGCGGFG-------GSHGG 234
           KQ+M SA S +    GSGNF  GRGG F  G  NFG GGNF G GG+G       GS+GG
Sbjct: 204 KQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262

Query: 235 SADGYNGFGNDGKNFGGGSSYNDFG-------NCNNQSSNFGP-------MKGGNFGGKR 280
              GYNGFG DG N+GGG  Y+  G          NQ   +G         +GGNFGG  
Sbjct: 263 GDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGN 322

Query: 281 SCLYGGGGQY--FAK----------PQNQGGYGGSSSSSSYGSG 312
              YGGGG Y  F            P   G +GG SS S YG G
Sbjct: 323 ---YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGG 363



 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 60/245 (24%), Positives = 99/245 (40%), Gaps = 29/245 (11%)

Query: 93  EDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVT 152
           E+   P     ++K+F+GG+  +T +  LR+++E++G      +M D  + + R F FVT
Sbjct: 23  EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82

Query: 153 FDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGG---RGGG 209
           +   +  D  +  + H V+G   E ++A+S++      +    +     F GG       
Sbjct: 83  YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKK---IFVGGIKEDTEE 139

Query: 210 FSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNFGGG---SSYNDFG--NC--- 261
           ++  D F   G             G   G+     D  +         Y+     NC   
Sbjct: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVK 199

Query: 262 ----NNQSSNFGPMKG-----GNFGGKRSCLYGGGGQYFAKPQN---QGGYGGSSSSS-- 307
                 +  + G  +G     GNF G R   +GGGG  F +  N   +GGYGG    S  
Sbjct: 200 KALSKQEMQSAGSQRGRGGGSGNFMG-RGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRG 258

Query: 308 SYGSG 312
           SYG G
Sbjct: 259 SYGGG 263


>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
           B1 [Homo sapiens]
          Length = 353

 Score =  364 bits (935), Expect = e-101
 Identities = 189/337 (56%), Positives = 226/337 (67%), Gaps = 40/337 (11%)

Query: 8   KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67
           +E +Q RKLFIGGL FET++ESLR++ EQWG LT+CVVMRDP + RSRGFGFV + ++ E
Sbjct: 15  REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74

Query: 68  VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127
           VDAAM ARPH + GRVVEPK AV+RE+S +PGA++TVKK+FVGGIKEDTEEH LRDY+E+
Sbjct: 75  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134

Query: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMA 187
           YGK + IEI+TD+ SGKKR F FVTFD+HD  DKIV+QKYH +NGHN EVRKALS+Q+M 
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194

Query: 188 SAPSSQR----------SRSGSGNFGGGRGGGF-SGNDNFGH----------------GG 220
              SS+           SR G GNFG G G  F  G+D +G                 GG
Sbjct: 195 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 254

Query: 221 NFSGCGGFGGSHGGSADGYNGFGNDGKNFGGG-----------SSYNDFGNCNNQSSNFG 269
           NF G  G+GG  GG   G  G+GN G  +GGG            +YNDFGN N Q SN+G
Sbjct: 255 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 314

Query: 270 PMKGGNFGGKRSC--LYGGGGQYFAKPQNQGGYGGSS 304
           PMK GNFGG R+    YGGG          GGYGG S
Sbjct: 315 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 351



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 28/94 (29%), Positives = 53/94 (56%)

Query: 3   KSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPY 62
           +S  P     ++KLF+GG++ +T +  LR + E++G +    ++ D  + + RGFGFV +
Sbjct: 101 ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160

Query: 63  VTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQ 96
              + VD  +  + H + G   E + A+SR++ Q
Sbjct: 161 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194


>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
           [Homo sapiens]
          Length = 341

 Score =  364 bits (935), Expect = e-101
 Identities = 189/337 (56%), Positives = 226/337 (67%), Gaps = 40/337 (11%)

Query: 8   KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67
           +E +Q RKLFIGGL FET++ESLR++ EQWG LT+CVVMRDP + RSRGFGFV + ++ E
Sbjct: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62

Query: 68  VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127
           VDAAM ARPH + GRVVEPK AV+RE+S +PGA++TVKK+FVGGIKEDTEEH LRDY+E+
Sbjct: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122

Query: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMA 187
           YGK + IEI+TD+ SGKKR F FVTFD+HD  DKIV+QKYH +NGHN EVRKALS+Q+M 
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182

Query: 188 SAPSSQR----------SRSGSGNFGGGRGGGF-SGNDNFGH----------------GG 220
              SS+           SR G GNFG G G  F  G+D +G                 GG
Sbjct: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 242

Query: 221 NFSGCGGFGGSHGGSADGYNGFGNDGKNFGGG-----------SSYNDFGNCNNQSSNFG 269
           NF G  G+GG  GG   G  G+GN G  +GGG            +YNDFGN N Q SN+G
Sbjct: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302

Query: 270 PMKGGNFGGKRSC--LYGGGGQYFAKPQNQGGYGGSS 304
           PMK GNFGG R+    YGGG          GGYGG S
Sbjct: 303 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 339



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 28/94 (29%), Positives = 53/94 (56%)

Query: 3   KSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPY 62
           +S  P     ++KLF+GG++ +T +  LR + E++G +    ++ D  + + RGFGFV +
Sbjct: 89  ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148

Query: 63  VTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQ 96
              + VD  +  + H + G   E + A+SR++ Q
Sbjct: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182


>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
           sapiens]
          Length = 305

 Score =  271 bits (693), Expect = 6e-73
 Identities = 148/304 (48%), Positives = 186/304 (61%), Gaps = 9/304 (2%)

Query: 9   EPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEV 68
           E  QL KLFIGGL  +TS+  LR H E +GTLT+CVV+ +P T RSR FGFV Y  VEE 
Sbjct: 2   ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61

Query: 69  DAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQY 128
           DAAM A PH + G  VE K AVSREDS RPGA+  VKK+FVGG+K D  E  L +++ Q+
Sbjct: 62  DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121

Query: 129 GKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMAS 188
           G  E  EI+ D+ SGKKR F FV F NHD+ DK  + K+H + GH  EV+KA+ K+ + S
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181

Query: 189 APSSQRSRSGSGNFGG-GRGGGFSGND-NFGHGGNFSGCGGFGGSHGGSADGYNGFGNDG 246
                 SRS  G  GG GRGGG   N  + G GG ++  GG+GG  GG  + Y G G  G
Sbjct: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGG-GGGG 240

Query: 247 KNFGG---GSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGG---GGQYFAKPQNQGGY 300
            ++GG   G+ +  FG+ +   S++GPMK G  GG     +GG    G Y       GGY
Sbjct: 241 SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGY 300

Query: 301 GGSS 304
           GGSS
Sbjct: 301 GGSS 304



 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 31/91 (34%), Positives = 51/91 (56%)

Query: 4   SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63
           S  P    +++KLF+GGL+ + ++  L  H  Q+GT+ +  ++ D  + + RGFGFV + 
Sbjct: 88  SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147

Query: 64  TVEEVDAAMNARPHKMGGRVVEPKTAVSRED 94
             +  D A   + H + G  VE K AV +ED
Sbjct: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 34/223 (15%)

Query: 106 KIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQ 165
           K+F+GG+   T E  LR ++E +G      ++ +  + + R F FVT+ N +  D  +  
Sbjct: 8   KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67

Query: 166 KYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGC 225
             H V+G+  E+++A+S++  A   +  + +     F GG  G  +  D   H   F   
Sbjct: 68  SPHAVDGNTVELKRAVSREDSARPGAHAKVKK---LFVGGLKGDVAEGDLIEHFSQF--- 121

Query: 226 GGFGGSHGGSADGYNGFGN--DGKNFGGGSSYNDFGNCNNQSS--NFGPMKGGNFGGKRS 281
                   G+ +      +   GK  G G  Y    +  ++++   F P++G     K++
Sbjct: 122 --------GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173

Query: 282 C----LYGGGGQYFAKPQNQGGYGGSSSSSSYGSGRRFQLGNK 320
                +Y GGG            GG S SS  G G R + G +
Sbjct: 174 VPKEDIYSGGG------------GGGSRSSRGGRGGRGRGGGR 204


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
           [Homo sapiens]
          Length = 336

 Score =  179 bits (453), Expect = 4e-45
 Identities = 99/279 (35%), Positives = 164/279 (58%), Gaps = 20/279 (7%)

Query: 2   SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
           +K ++ K  +   K+FIGGL ++T+ + L+ +  ++G + +C +  DP T RSRGFGFV 
Sbjct: 66  AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125

Query: 62  YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
           +   E VD  M+ + HK+ G+V++PK A + +  +       VKKIFVGG+  DT E  +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179

Query: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
           R+Y+  +G+ E IE+  D  + K+R F F+TF   +   KI+ +KYH V    CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239

Query: 182 SKQKMASAPSSQRSRSGSGNFGG---GRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADG 238
           SK++       Q+     G F G   GRGGG S N N G+   ++   G+ G++G ++ G
Sbjct: 240 SKEQY----QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN--QGY-GNYGYNSQG 292

Query: 239 YNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPM--KGGN 275
           Y G+G  G ++ G ++Y  +G+ +NQ S +G +  +GG+
Sbjct: 293 YGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 329


>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
           [Homo sapiens]
          Length = 355

 Score =  178 bits (451), Expect = 7e-45
 Identities = 99/277 (35%), Positives = 163/277 (58%), Gaps = 20/277 (7%)

Query: 4   SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63
           SE+    ++  K+FIGGL ++T+ + L+ +  ++G + +C +  DP T RSRGFGFV + 
Sbjct: 87  SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146

Query: 64  TVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRD 123
             E VD  M+ + HK+ G+V++PK A + +  +       VKKIFVGG+  DT E  +R+
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200

Query: 124 YYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK 183
           Y+  +G+ E IE+  D  + K+R F F+TF   +   KI+ +KYH V    CE++ A+SK
Sbjct: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260

Query: 184 QKMASAPSSQRSRSGSGNFGG---GRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN 240
           ++       Q+     G F G   GRGGG S N N G+   ++   G+ G++G ++ GY 
Sbjct: 261 EQY----QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN--QGY-GNYGYNSQGYG 313

Query: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPM--KGGN 275
           G+G  G ++ G ++Y  +G+ +NQ S +G +  +GG+
Sbjct: 314 GYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 348



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 2   SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
           +K+   KEP  ++K+F+GGL  +T +E +R +   +G +    +  D  TN+ RGF F+ 
Sbjct: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229

Query: 62  YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQR 97
           +   E V   M  + H +G    E K A+S+E  Q+
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265


>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
           [Homo sapiens]
          Length = 332

 Score =  169 bits (429), Expect = 2e-42
 Identities = 91/275 (33%), Positives = 150/275 (54%), Gaps = 19/275 (6%)

Query: 8   KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67
           K  +   K+F+GGL ++TS + L+ +  ++G + +C +  DPNT RSRGFGF+ +     
Sbjct: 64  KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123

Query: 68  VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127
           V+  ++ + H++ GRV++PK A++ +          VKKIFVGG+  +  E  +R+Y+ +
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176

Query: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK---- 183
           +G+ E IE+  D    K+R F F+TF   +   K++ +K+H V+G  CE++ A  K    
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236

Query: 184 -QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFS-GCG---GFGGSHGG---S 235
            Q+  S     R+R   G+ GGG GGG S + N G+G  ++ G G   G+G  +GG   S
Sbjct: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYS 296

Query: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGP 270
             GY G+G       G ++Y          +N+ P
Sbjct: 297 PYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKP 331


>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
           sapiens]
          Length = 420

 Score =  162 bits (410), Expect = 4e-40
 Identities = 87/283 (30%), Positives = 146/283 (51%), Gaps = 15/283 (5%)

Query: 2   SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
           SK  + K  +   K+FIGGL ++TS + L  +  ++G + +C +  DP T RSRGFGFV 
Sbjct: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195

Query: 62  YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
           +     VD  +  + HK+ G++++PK A + +  + P      KK+FVGG+  DT E  +
Sbjct: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249

Query: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
           ++Y+  +G+ E IE+  D  + ++R F F+T+ + +   K++  +YH +    CE++ A 
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309

Query: 182 SKQKMASAPSSQRSRSG--SGNFGGGRGGGFSGNDNFGHGGN---FSGCGGFGGSHGGSA 236
            K+        Q+   G  +G  GG RG G     N+  G N     G G +  ++GG  
Sbjct: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369

Query: 237 D--GYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMK--GGN 275
           +  GY G+   G N+G       + + + Q S +G     GGN
Sbjct: 370 NYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGN 412


>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
           [Homo sapiens]
          Length = 285

 Score =  155 bits (393), Expect = 3e-38
 Identities = 75/215 (34%), Positives = 125/215 (58%), Gaps = 13/215 (6%)

Query: 8   KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67
           K  +   K+F+GGL ++TS + L+ +  ++G + +C +  DPNT RSRGFGF+ +     
Sbjct: 64  KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123

Query: 68  VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127
           V+  ++ + H++ GRV++PK A++ +          VKKIFVGG+  +  E  +R+Y+ +
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176

Query: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK---- 183
           +G+ E IE+  D    K+R F F+TF   +   K++ +K+H V+G  CE++ A  K    
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236

Query: 184 -QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFG 217
            Q+  S     R+R   G+ GGG GGG  G+ N+G
Sbjct: 237 QQQYGSGGRGNRNRGNRGS-GGGGGGGGQGSTNYG 270


>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
           [Homo sapiens]
          Length = 287

 Score =  152 bits (383), Expect = 5e-37
 Identities = 82/231 (35%), Positives = 131/231 (56%), Gaps = 12/231 (5%)

Query: 2   SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
           +K ++ K  +   K+FIGGL ++T+ + L+ +  ++G + +C +  DP T RSRGFGFV 
Sbjct: 66  AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125

Query: 62  YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
           +   E VD  M+ + HK+ G+V++PK A + +  +       VKKIFVGG+  DT E  +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179

Query: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
           R+Y+  +G+ E IE+  D  + K+R F F+TF   +   KI+ +KYH V    CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239

Query: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSH 232
           SK++       Q+ + GS     GR  G  G+   G+ G  S  GG   S+
Sbjct: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNSY 284


>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
           [Homo sapiens]
          Length = 306

 Score =  151 bits (381), Expect = 9e-37
 Identities = 82/229 (35%), Positives = 130/229 (56%), Gaps = 12/229 (5%)

Query: 4   SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63
           SE+    ++  K+FIGGL ++T+ + L+ +  ++G + +C +  DP T RSRGFGFV + 
Sbjct: 87  SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146

Query: 64  TVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRD 123
             E VD  M+ + HK+ G+V++PK A + +  +       VKKIFVGG+  DT E  +R+
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200

Query: 124 YYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK 183
           Y+  +G+ E IE+  D  + K+R F F+TF   +   KI+ +KYH V    CE++ A+SK
Sbjct: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260

Query: 184 QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSH 232
           ++       Q+ + GS     GR  G  G+   G+ G  S  GG   S+
Sbjct: 261 EQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNSY 303



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 2   SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
           +K+   KEP  ++K+F+GGL  +T +E +R +   +G +    +  D  TN+ RGF F+ 
Sbjct: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229

Query: 62  YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQR 97
           +   E V   M  + H +G    E K A+S+E  Q+
Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265


>gi|20373175 musashi 2 isoform a [Homo sapiens]
          Length = 328

 Score =  145 bits (366), Expect = 5e-35
 Identities = 106/319 (33%), Positives = 153/319 (47%), Gaps = 38/319 (11%)

Query: 2   SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
           S ++S  +P    K+FIGGL ++TS +SLR +  ++G + EC+VMRDP T RSRGFGFV 
Sbjct: 12  SANDSQHDPG---KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68

Query: 62  YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
           +     VD  +    H++  + ++PK A  R    +P      KKIFVGG+  +T    +
Sbjct: 69  FADPASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDV 126

Query: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
           + Y+EQ+GK E   +M D+ + + R F FVTF+N D  +K+    +H +N    E +KA 
Sbjct: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186

Query: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNG 241
            K+ M             G  G  RG  ++  D F  G    G   F  ++G    GY G
Sbjct: 187 PKEVMFP----------PGTRGRARGLPYT-MDAFMLGMGMLGYPNFVATYG---RGYPG 232

Query: 242 FG-NDGKNFGG--GSSYNDFGN---CNNQSSNFGPMKGGNFGGKRS-----CLYG----- 285
           F  + G  F G   ++Y           + S   P + G F G  S      LYG     
Sbjct: 233 FAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQD 292

Query: 286 -GGGQYF--AKPQNQGGYG 301
            G G Y   A PQ   G+G
Sbjct: 293 SGVGNYISAASPQPGSGFG 311


>gi|4505255 musashi 1 [Homo sapiens]
          Length = 362

 Score =  140 bits (352), Expect = 2e-33
 Identities = 86/240 (35%), Positives = 124/240 (51%), Gaps = 18/240 (7%)

Query: 6   SPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTV 65
           SP  P    K+FIGGL ++T+ E LR +  Q+G + EC+VMRDP T RSRGFGFV ++  
Sbjct: 12  SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71

Query: 66  EEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYY 125
             VD  +    H++  + ++PK A  R    +P      KKIFVGG+  +T    ++ Y+
Sbjct: 72  AGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYF 129

Query: 126 EQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQK 185
           EQ+GK +   +M D+ + + R F FVTF++ D  +K+    +H +N    E +KA  K+ 
Sbjct: 130 EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEV 189

Query: 186 MASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGF------GGSHGGSADGY 239
           M S   S R RS    +         G D F  G    G  GF        S+ G A GY
Sbjct: 190 M-SPTGSARGRSRVMPY---------GMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 239


>gi|25121993 musashi 2 isoform b [Homo sapiens]
          Length = 251

 Score =  140 bits (352), Expect = 2e-33
 Identities = 70/182 (38%), Positives = 106/182 (58%), Gaps = 2/182 (1%)

Query: 15  KLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNA 74
           K+FIGGL ++TS +SLR +  ++G + EC+VMRDP T RSRGFGFV +     VD  +  
Sbjct: 18  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77

Query: 75  RPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVI 134
             H++  + ++PK A  R    +P      KKIFVGG+  +T    ++ Y+EQ+GK E  
Sbjct: 78  PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135

Query: 135 EIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQR 194
            +M D+ + + R F FVTF+N D  +K+    +H +N    E +KA  K+ M    +  R
Sbjct: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195

Query: 195 SR 196
           +R
Sbjct: 196 AR 197



 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 32/93 (34%), Positives = 52/93 (55%)

Query: 7   PKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVE 66
           PK   + +K+F+GGL   T  E ++ + EQ+G + + ++M D  TNR RGFGFV +   +
Sbjct: 99  PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158

Query: 67  EVDAAMNARPHKMGGRVVEPKTAVSREDSQRPG 99
            V+       H++  ++VE K A  +E    PG
Sbjct: 159 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191


>gi|239747524 PREDICTED: similar to serum response factor-related
           protein C4 [Homo sapiens]
          Length = 434

 Score =  132 bits (332), Expect = 4e-31
 Identities = 71/124 (57%), Positives = 78/124 (62%), Gaps = 13/124 (10%)

Query: 197 SGSGNFGG--GRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGN---------D 245
           +G GN GG  G G G+SG    G+G    G G  G  +GGS   YN + N          
Sbjct: 52  NGFGNDGGYGGGGPGYSGGSR-GYGSVGQGYGSQGSGYGGSGS-YNSYNNGGGGSFGGGS 109

Query: 246 GKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSS 305
           G +FGG  SYNDFGN NNQSSNFGP KGGNFGG+ S   GGGGQYF KPQNQGGYGGSSS
Sbjct: 110 GSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSS 169

Query: 306 SSSY 309
           S  Y
Sbjct: 170 SRHY 173



 Score = 37.4 bits (85), Expect = 0.018
 Identities = 16/19 (84%), Positives = 18/19 (94%)

Query: 1  MSKSESPKEPKQLRKLFIG 19
          +S SESPKEPKQLRKLF+G
Sbjct: 28 LSNSESPKEPKQLRKLFLG 46


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score =  125 bits (314), Expect = 5e-29
 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 18/240 (7%)

Query: 12  QLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAA 71
           ++ KLF+GGL + T+ E+LRS+  Q+G + +CV+M+D  TN+SRGFGFV +     V   
Sbjct: 8   EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67

Query: 72  MNARPHKMGGRVVEPKTAVSR---EDSQRP---------GAYLTVKKIFVGGIKEDTEEH 119
           + +RPH + GR ++PK    R    +  RP                KIFVGGI  +  E 
Sbjct: 68  LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127

Query: 120 PLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRK 179
            LR+Y++++G    + ++ D    + R F F+TF++  S D+ V   +H + G   EV++
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187

Query: 180 ALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSG------NDNFGHGGNFSGCGGFGGSHG 233
           A  +   + AP    +             G++G         +G  G +   G   G +G
Sbjct: 188 AEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247


>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score =  125 bits (314), Expect = 5e-29
 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 18/240 (7%)

Query: 12  QLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAA 71
           ++ KLF+GGL + T+ E+LRS+  Q+G + +CV+M+D  TN+SRGFGFV +     V   
Sbjct: 8   EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67

Query: 72  MNARPHKMGGRVVEPKTAVSR---EDSQRP---------GAYLTVKKIFVGGIKEDTEEH 119
           + +RPH + GR ++PK    R    +  RP                KIFVGGI  +  E 
Sbjct: 68  LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127

Query: 120 PLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRK 179
            LR+Y++++G    + ++ D    + R F F+TF++  S D+ V   +H + G   EV++
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187

Query: 180 ALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSG------NDNFGHGGNFSGCGGFGGSHG 233
           A  +   + AP    +             G++G         +G  G +   G   G +G
Sbjct: 188 AEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247


>gi|6678271 TAR DNA binding protein [Homo sapiens]
          Length = 414

 Score =  105 bits (262), Expect = 5e-23
 Identities = 96/329 (29%), Positives = 143/329 (43%), Gaps = 60/329 (18%)

Query: 16  LFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNAR 75
           L + GL ++T+++ L+ +   +G +    V +D  T  S+GFGFV +   E     M+ R
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165

Query: 76  PHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIE 135
            H + GR  + K   S++    P   L  +K+FVG   ED  E  LR+++ QYG  +V++
Sbjct: 166 -HMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219

Query: 136 IMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRS 195
           +   +     R FAFVTF + D   + +  +  I+ G +  +  A  K       +S R 
Sbjct: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269

Query: 196 RSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGND-GKNFGGG-- 252
              SG FGG  GG             F   GGFG S GG A    G GN+ G N GGG  
Sbjct: 270 LERSGRFGGNPGG-------------FGNQGGFGNSRGGGA----GLGNNQGSNMGGGMN 312

Query: 253 -------------------SSYNDFGNCNNQSSNFGP----MKGGNFGGKRSCLYGGGGQ 289
                              SS+   G   +Q +  GP       GN   + +  +G G  
Sbjct: 313 FGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNN 372

Query: 290 YFAKPQNQGGYGGSSSSSSYGSGRRFQLG 318
            ++   N G   G  S+S+ GSG  F  G
Sbjct: 373 SYS-GSNSGAAIGWGSASNAGSGSGFNGG 400



 Score = 33.1 bits (74), Expect = 0.34
 Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 22/254 (8%)

Query: 2   SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
           +  +S  EP + RK+F+G    + +++ LR    Q+G + +  + +       R F FV 
Sbjct: 179 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVT 233

Query: 62  YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
           +   +++  ++      + G  V    A  + +S R    L     F G       +   
Sbjct: 234 FAD-DQIAQSLCGEDLIIKGISVHISNAEPKHNSNR---QLERSGRFGGNPGGFGNQGGF 289

Query: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
            +      +     +  +QGS       F  F    S +  ++         +  +   L
Sbjct: 290 GN-----SRGGGAGLGNNQGSNMGGGMNFGAF----SINPAMMAAAQAALQSSWGMMGML 340

Query: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN- 240
           + Q+  S PS      G+      +  G SGN+++    + +  G    S+ GS  G+N 
Sbjct: 341 ASQQNQSGPSGNNQNQGNMQREPNQAFG-SGNNSYSGSNSGAAIGWGSASNAGSGSGFNG 399

Query: 241 GFGN--DGKNFGGG 252
           GFG+  D K+ G G
Sbjct: 400 GFGSSMDSKSSGWG 413


>gi|195972866 keratin 10 [Homo sapiens]
          Length = 584

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 48/121 (39%), Positives = 59/121 (48%), Gaps = 5/121 (4%)

Query: 203 GGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNFGGGSSYNDFGNCN 262
           GGGRGGG  G    G+GG  SG G  GG HGG   G +G G  G + GGGSS   +G  +
Sbjct: 461 GGGRGGGSFGG---GYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGS 517

Query: 263 NQSSNFGPMKGGNFGGKRSCLYG--GGGQYFAKPQNQGGYGGSSSSSSYGSGRRFQLGNK 320
           +   + G   GG  GG      G  GGG       + GGYGG SSS  + S     +G  
Sbjct: 518 SSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGGGYGGGSSSGGHKSSSSGSVGES 577

Query: 321 T 321
           +
Sbjct: 578 S 578



 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 43/109 (39%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 197 SGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNFGGGSSYN 256
           SG G+ GGG GGG  G+   G+GG  SG G  GG +GG +      G+    +GGGSS  
Sbjct: 478 SGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGG 537

Query: 257 DFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSS 305
             G     SS  G   GG +GG  S     GG    K  + G  G SSS
Sbjct: 538 GGGGYGGGSSGGGSSSGGGYGGGSS----SGGH---KSSSSGSVGESSS 579



 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 52/137 (37%), Positives = 60/137 (43%), Gaps = 29/137 (21%)

Query: 191 SSQRSRSGSGNFGGGRGGGFSG----NDNFGHGGNFSGCGGF-----------GGSHGGS 235
           SS RS  G G  G G GGG S     +     GG FS  GGF           GG  GGS
Sbjct: 12  SSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSS-GGFSGGSFSRGSSGGGCFGGS 70

Query: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295
           + GY G G     FGGGS    +G     SS+FG   GG+FGG       GGG +     
Sbjct: 71  SGGYGGLG----GFGGGSFRGSYG-----SSSFGGSYGGSFGGGSF----GGGSFGGGSF 117

Query: 296 NQGGYGGSSSSSSYGSG 312
             GG+GG      +G G
Sbjct: 118 GGGGFGGGGFGGGFGGG 134



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 47/123 (38%), Positives = 56/123 (45%), Gaps = 16/123 (13%)

Query: 191 SSQRSRSGSGNFGGG-RGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNF 249
           SS R  S  G+ GGG   GGFSG       G+FS     GG  GGS+ GY G G     F
Sbjct: 32  SSLRISSSKGSLGGGFSSGGFSG-------GSFSRGSSGGGCFGGSSGGYGGLGG----F 80

Query: 250 GGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSSSSSY 309
           GGGS    +G+ +   S  G   GG+FGG       GGG +       GG+GG       
Sbjct: 81  GGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSF----GGGSFGGGGFGGGGFGGGFGGGFG 136

Query: 310 GSG 312
           G G
Sbjct: 137 GDG 139



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 42/103 (40%), Positives = 46/103 (44%), Gaps = 16/103 (15%)

Query: 188 SAPSSQRSRSGSGNFGGGRGG-----GFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGF 242
           S  S  R  SG G FGG  GG     GF G    G  G+ S  G +GGS GG + G   F
Sbjct: 53  SGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSF 112

Query: 243 GNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYG 285
           G  G +FGGG     FG        FG   GG FGG    L G
Sbjct: 113 G--GGSFGGGG----FG-----GGGFGGGFGGGFGGDGGLLSG 144



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 50/139 (35%), Positives = 64/139 (46%), Gaps = 31/139 (22%)

Query: 172 GHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGGR------GGGFSGNDNFGHGG--NFS 223
           G  C     +S  +++S+  S      SG F GG       GGG  G  + G+GG   F 
Sbjct: 22  GGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGGLGGFG 81

Query: 224 GCGGFGGSHGGSADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCL 283
           G G F GS+G S+ G    G+ G +FGGGS    FG  +    +FG   GG FGG     
Sbjct: 82  G-GSFRGSYGSSSFG----GSYGGSFGGGS----FGGGSFGGGSFG---GGGFGG----- 124

Query: 284 YGGGGQYFAKPQNQGGYGG 302
            GG G  F      GG+GG
Sbjct: 125 -GGFGGGFG-----GGFGG 137



 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 38/97 (39%), Positives = 46/97 (47%), Gaps = 20/97 (20%)

Query: 197 SGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNFGGGSSYN 256
           SG G+ GGG GGG S     GHGG+ SG  G GGS GG   GY G    G + GG SS  
Sbjct: 504 SGGGSSGGGYGGGSSSG---GHGGSSSGGYG-GGSSGGGGGGYGG----GSSGGGSSSGG 555

Query: 257 DFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAK 293
            +G             G + GG +S   G  G+  +K
Sbjct: 556 GYGG------------GSSSGGHKSSSSGSVGESSSK 580



 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 191 SSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNFG 250
           SS    SG G  GG   GG  G+ + G+GG  S  GG GG +GG + G  G  + G  +G
Sbjct: 503 SSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSS--GGGGGGYGGGSSG--GGSSSGGGYG 558

Query: 251 GGSSYNDFGNCNNQSSNFGPMKGGNF 276
           GGSS     + ++ S      KG  +
Sbjct: 559 GGSSSGGHKSSSSGSVGESSSKGPRY 584



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 192 SQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGY-NGFGNDGKNFG 250
           S  S S  G++GG  GGG  G  +FG GG+F G GGFGG  GG   G+  GFG DG    
Sbjct: 88  SYGSSSFGGSYGGSFGGGSFGGGSFG-GGSFGG-GGFGG--GGFGGGFGGGFGGDGGLLS 143

Query: 251 GGSSYNDFGNCNNQSSNF 268
           G        N N++ +++
Sbjct: 144 GNEKVT-MQNLNDRLASY 160



 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 210 FSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFG 269
           +S + ++    +  G GG G   GG         + G   GG SS    G   ++ S+ G
Sbjct: 5   YSSSKHYSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGG 64

Query: 270 PMKGGNFGGKRSCLYGGGGQY---FAKPQNQGGYGGSSSSSSYGSG 312
              GG+ GG       GGG +   +      G YGGS    S+G G
Sbjct: 65  GCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGG 110


>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
          Length = 172

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 16/162 (9%)

Query: 106 KIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQ 165
           K+FVGG+  DT E  L   + +YG+   + ++ D+ + + R F FVTF+N D     ++ 
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM- 65

Query: 166 KYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGGRG---GGFSGNDNFGHGGNF 222
               +NG + + R+    Q  A   S  RSR   G   GGRG   GG      F  GG  
Sbjct: 66  ---AMNGKSVDGRQIRVDQ--AGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD 120

Query: 223 SGCGG-----FGGSHGGSADGYNGFGNDG--KNFGGGSSYND 257
            G GG       G +GGS D Y+     G   +   G SY D
Sbjct: 121 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162



 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 15 KLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEV-DAAMN 73
          KLF+GGL F+T+++SL     ++G ++E VV++D  T RSRGFGFV +  +++  DA M 
Sbjct: 7  KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 74 ARPHKMGGRVVEPKTAVSREDSQRPG 99
               + GR +    A    D++  G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
          Length = 589

 Score = 72.0 bits (175), Expect = 7e-13
 Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 200 GNFGGGRGGGFSGNDNFGHGGNFSGC-----GGFGGSHGGSADGYNGFGNDGKNFGGGSS 254
           G +GG RGGG+ G D  G+GG+  G      GG+GG  GG      G+G D   +GG  S
Sbjct: 466 GGYGGDRGGGYGG-DRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRS 524

Query: 255 YNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGG 302
              +G      S +G  + G +GG RS    GG +      ++GGYGG
Sbjct: 525 RGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGG 572



 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 49/121 (40%), Positives = 63/121 (52%), Gaps = 10/121 (8%)

Query: 196 RSGSGNFGGGR--GGGFSGN-DNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNFGGG 252
           RSG G +GG R  GGG+SG+    G+GG+ SG GG+GG  GG   G  G G  G   GGG
Sbjct: 419 RSGGG-YGGDRSSGGGYSGDRSGGGYGGDRSG-GGYGGDRGGGYGGDRGGGYGGDR-GGG 475

Query: 253 SSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSSSSSYGSG 312
              +  G   ++   +G  +GG +GG R    G  G Y     ++GGYGG  S   YG  
Sbjct: 476 YGGDRGGYGGDRGGGYGGDRGG-YGGDRGGYGGDRGGYGG---DRGGYGGDRSRGGYGGD 531

Query: 313 R 313
           R
Sbjct: 532 R 532



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 45/125 (36%), Positives = 56/125 (44%), Gaps = 19/125 (15%)

Query: 196 RSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGY-----NGFGNDGKNFG 250
           RSG G +GG RGGG+ G+   G+GG+       GG +GG   GY      G+G D   +G
Sbjct: 447 RSGGG-YGGDRGGGYGGDRGGGYGGDR------GGGYGGDRGGYGGDRGGGYGGDRGGYG 499

Query: 251 GGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGG--GGQYFAKPQNQGGYGGSSSSSS 308
           G     D G        +G  +GG  G +    YGG  GG         GGYGG  S   
Sbjct: 500 G-----DRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGG 554

Query: 309 YGSGR 313
           YG  R
Sbjct: 555 YGGDR 559



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 63/242 (26%), Positives = 94/242 (38%), Gaps = 53/242 (21%)

Query: 107 IFVGGIKEDTEEHPLRDYYEQYG--KTE------VIEIMTDQGSGKKRDFAFVTFDNHDS 158
           IFV G+ E      + ++++Q G  KT       +I + TD+ +GK +  A V+FD+  S
Sbjct: 233 IFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPS 292

Query: 159 TDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGH 218
             K  I  +     H   ++ + + ++    P   R        GGG GGG  G   +  
Sbjct: 293 A-KAAIDWFDGKEFHGNIIKVSFATRR----PEFMR--------GGGSGGGRRGRGGYRG 339

Query: 219 GGNFSG----------------CGGFGGSHGGSADGYN----------GFGNDGKNFGGG 252
            G F G                CG    +   S +  N          G    G+ +GG 
Sbjct: 340 RGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGE 399

Query: 253 SSYNDFGNCNNQSSNF-GPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSSSSSYGS 311
             Y   G        + G   GG +GG RS    GGG  ++  ++ GGYGG  S   YG 
Sbjct: 400 RGYRGRGGRGGDRGGYGGDRSGGGYGGDRS---SGGG--YSGDRSGGGYGGDRSGGGYGG 454

Query: 312 GR 313
            R
Sbjct: 455 DR 456



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 23/132 (17%)

Query: 190 PSSQRSRSGSGNFGGG--------RGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNG 241
           P  + SR   G+F G         RG G  G D  G+GG+ SG GG+GG    S  GY+G
Sbjct: 379 PRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSG-GGYGGDRS-SGGGYSG 436

Query: 242 FGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYG 301
               G  +GG  S   +G   ++   +G  +GG +GG R   YGG         ++GGYG
Sbjct: 437 -DRSGGGYGGDRSGGGYGG--DRGGGYGGDRGGGYGGDRGGGYGG---------DRGGYG 484

Query: 302 GSSSSSSYGSGR 313
           G      YG  R
Sbjct: 485 G-DRGGGYGGDR 495



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 194 RSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNFGGG- 252
           RSR G G   GG G G+ G+ + G+GG+ SG GG+GG  GG      G+G D   +GG  
Sbjct: 523 RSRGGYGGDRGG-GSGYGGDRSGGYGGDRSG-GGYGGDRGG------GYGGDRGGYGGKM 574

Query: 253 SSYNDFGN 260
              ND+ N
Sbjct: 575 GGRNDYRN 582



 Score = 35.8 bits (81), Expect = 0.052
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 8/98 (8%)

Query: 223 SGCGGFGGSHGGSADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGG--NFGGKR 280
           S  G +G S GG    Y+ +GN G    G +S +  G      S++G    G  ++G   
Sbjct: 2   SDSGSYGQS-GGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSY 60

Query: 281 SCLYGG-----GGQYFAKPQNQGGYGGSSSSSSYGSGR 313
           S  YGG        Y  +P N  G   +  SS    GR
Sbjct: 61  SQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGR 98



 Score = 35.4 bits (80), Expect = 0.068
 Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 16/76 (21%)

Query: 195 SRSGSGN--FGGGRGGGFSGNDNFGHGG-NFSGCGGFGGSHGGSADGYNGFGNDGKNFGG 251
           SR G  N  +GG +GGG       G GG +  G G   GS GG   G+       KNFGG
Sbjct: 165 SRYGEDNRGYGGSQGGGR------GRGGYDKDGRGPMTGSSGGDRGGF-------KNFGG 211

Query: 252 GSSYNDFGNCNNQSSN 267
              Y    + +++S N
Sbjct: 212 HRDYGPRTDADSESDN 227



 Score = 33.1 bits (74), Expect = 0.34
 Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 193 QRSRSGSGNFGGGRGG-------GFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGND 245
           Q+S S  GN G    G       G+    +  +G N+SG   +G S+  S   Y G+ N 
Sbjct: 14  QQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQS---YGGYENQ 70

Query: 246 GKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAK---PQNQGGYGG 302
            ++      YN+ G   N  S+    +GG         YG    Y  +    Q+QG Y  
Sbjct: 71  KQSSYSQQPYNNQGQQQNMESS--GSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDE 128

Query: 303 SSS 305
            S+
Sbjct: 129 QSN 131



 Score = 32.3 bits (72), Expect = 0.58
 Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 22/122 (18%)

Query: 195 SRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGND-----GKNF 249
           S SGS    GG    +S   N G  G           +G ++  Y+G+G       G+N+
Sbjct: 2   SDSGSYGQSGGEQQSYSTYGNPGSQG-----------YGQASQSYSGYGQTTDSSYGQNY 50

Query: 250 GGGSSY-----NDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ-NQGGYGGS 303
            G SSY       +G   NQ  +    +  N  G++  +   G Q    P  +Q  YG  
Sbjct: 51  SGYSSYGQSYSQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQ 110

Query: 304 SS 305
            S
Sbjct: 111 DS 112


>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
          Length = 592

 Score = 72.0 bits (175), Expect = 7e-13
 Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 200 GNFGGGRGGGFSGNDNFGHGGNFSGC-----GGFGGSHGGSADGYNGFGNDGKNFGGGSS 254
           G +GG RGGG+ G D  G+GG+  G      GG+GG  GG      G+G D   +GG  S
Sbjct: 469 GGYGGDRGGGYGG-DRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRS 527

Query: 255 YNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGG 302
              +G      S +G  + G +GG RS    GG +      ++GGYGG
Sbjct: 528 RGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGG 575



 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 49/121 (40%), Positives = 63/121 (52%), Gaps = 10/121 (8%)

Query: 196 RSGSGNFGGGR--GGGFSGN-DNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNFGGG 252
           RSG G +GG R  GGG+SG+    G+GG+ SG GG+GG  GG   G  G G  G   GGG
Sbjct: 422 RSGGG-YGGDRSSGGGYSGDRSGGGYGGDRSG-GGYGGDRGGGYGGDRGGGYGGDR-GGG 478

Query: 253 SSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSSSSSYGSG 312
              +  G   ++   +G  +GG +GG R    G  G Y     ++GGYGG  S   YG  
Sbjct: 479 YGGDRGGYGGDRGGGYGGDRGG-YGGDRGGYGGDRGGYGG---DRGGYGGDRSRGGYGGD 534

Query: 313 R 313
           R
Sbjct: 535 R 535



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 45/125 (36%), Positives = 56/125 (44%), Gaps = 19/125 (15%)

Query: 196 RSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGY-----NGFGNDGKNFG 250
           RSG G +GG RGGG+ G+   G+GG+       GG +GG   GY      G+G D   +G
Sbjct: 450 RSGGG-YGGDRGGGYGGDRGGGYGGDR------GGGYGGDRGGYGGDRGGGYGGDRGGYG 502

Query: 251 GGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGG--GGQYFAKPQNQGGYGGSSSSSS 308
           G     D G        +G  +GG  G +    YGG  GG         GGYGG  S   
Sbjct: 503 G-----DRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGG 557

Query: 309 YGSGR 313
           YG  R
Sbjct: 558 YGGDR 562



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 63/242 (26%), Positives = 94/242 (38%), Gaps = 53/242 (21%)

Query: 107 IFVGGIKEDTEEHPLRDYYEQYG--KTE------VIEIMTDQGSGKKRDFAFVTFDNHDS 158
           IFV G+ E      + ++++Q G  KT       +I + TD+ +GK +  A V+FD+  S
Sbjct: 236 IFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPS 295

Query: 159 TDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGH 218
             K  I  +     H   ++ + + ++    P   R        GGG GGG  G   +  
Sbjct: 296 A-KAAIDWFDGKEFHGNIIKVSFATRR----PEFMR--------GGGSGGGRRGRGGYRG 342

Query: 219 GGNFSG----------------CGGFGGSHGGSADGYN----------GFGNDGKNFGGG 252
            G F G                CG    +   S +  N          G    G+ +GG 
Sbjct: 343 RGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGE 402

Query: 253 SSYNDFGNCNNQSSNF-GPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSSSSSYGS 311
             Y   G        + G   GG +GG RS    GGG  ++  ++ GGYGG  S   YG 
Sbjct: 403 RGYRGRGGRGGDRGGYGGDRSGGGYGGDRS---SGGG--YSGDRSGGGYGGDRSGGGYGG 457

Query: 312 GR 313
            R
Sbjct: 458 DR 459



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 23/132 (17%)

Query: 190 PSSQRSRSGSGNFGGG--------RGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNG 241
           P  + SR   G+F G         RG G  G D  G+GG+ SG GG+GG    S  GY+G
Sbjct: 382 PRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSG-GGYGGDRS-SGGGYSG 439

Query: 242 FGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYG 301
               G  +GG  S   +G   ++   +G  +GG +GG R   YGG         ++GGYG
Sbjct: 440 -DRSGGGYGGDRSGGGYGG--DRGGGYGGDRGGGYGGDRGGGYGG---------DRGGYG 487

Query: 302 GSSSSSSYGSGR 313
           G      YG  R
Sbjct: 488 G-DRGGGYGGDR 498



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 194 RSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNFGGG- 252
           RSR G G   GG G G+ G+ + G+GG+ SG GG+GG  GG      G+G D   +GG  
Sbjct: 526 RSRGGYGGDRGG-GSGYGGDRSGGYGGDRSG-GGYGGDRGG------GYGGDRGGYGGKM 577

Query: 253 SSYNDFGN 260
              ND+ N
Sbjct: 578 GGRNDYRN 585



 Score = 38.9 bits (89), Expect = 0.006
 Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 12/123 (9%)

Query: 193 QRSRSGSGNFGGGRGG-------GFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGND 245
           Q+S S  GN G    G       G+    +  +G N+SG   +G S  G +  Y G+ N 
Sbjct: 14  QQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQ 73

Query: 246 GKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAK---PQNQGGYGG 302
            ++      YN+ G   N  S+    +GG         YG    Y  +    Q+QG Y  
Sbjct: 74  KQSSYSQQPYNNQGQQQNMESS--GSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDE 131

Query: 303 SSS 305
            S+
Sbjct: 132 QSN 134



 Score = 35.4 bits (80), Expect = 0.068
 Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 16/76 (21%)

Query: 195 SRSGSGN--FGGGRGGGFSGNDNFGHGG-NFSGCGGFGGSHGGSADGYNGFGNDGKNFGG 251
           SR G  N  +GG +GGG       G GG +  G G   GS GG   G+       KNFGG
Sbjct: 168 SRYGEDNRGYGGSQGGGR------GRGGYDKDGRGPMTGSSGGDRGGF-------KNFGG 214

Query: 252 GSSYNDFGNCNNQSSN 267
              Y    + +++S N
Sbjct: 215 HRDYGPRTDADSESDN 230



 Score = 32.0 bits (71), Expect = 0.76
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 223 SGCGGFGGSHGGSADGYNGFGNDG-KNFGGGS-SYNDFGNCNNQSSNFGPMKGGNFGGKR 280
           S  G +G S GG    Y+ +GN G + +G  S SY+ +G   + S       G N+ G  
Sbjct: 2   SDSGSYGQS-GGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSS------YGQNYSGYS 54

Query: 281 SCLYGGGGQYFAKPQNQGGYGGSSSSS 307
           S  YG     ++  Q+ GGY     SS
Sbjct: 55  S--YGQSQSGYS--QSYGGYENQKQSS 77


>gi|55956899 keratin 9 [Homo sapiens]
          Length = 623

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 46/123 (37%), Positives = 52/123 (42%), Gaps = 13/123 (10%)

Query: 188 SAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGNDGK 247
           S   S  S  G    GGG GGG+ G    GH G  SG G  GGS G    G    G  G 
Sbjct: 512 SRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGG-SGGGHSGGSGGNYGGGSGSGGGSGG 570

Query: 248 NFGGGS-SYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSSS 306
            +GGGS S    G  +   S FG   GG++GG       G           GGYGG S  
Sbjct: 571 GYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSG-----------GGYGGGSGK 619

Query: 307 SSY 309
           SS+
Sbjct: 620 SSH 622



 Score = 69.7 bits (169), Expect = 3e-12
 Identities = 47/126 (37%), Positives = 59/126 (46%), Gaps = 10/126 (7%)

Query: 195 SRSGSGNF--GGGRGGGFSGNDNF--GHGGNFSGCGGFGGSHGGSADGYNGFGNDGKNFG 250
           SR GSG    GGG GGG+ G      G GG++ G  G GG  GG   G +G G+ G + G
Sbjct: 489 SRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGS-G 547

Query: 251 GGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKP----QNQGGYGGSSSS 306
           GG S    GN    S + G   GG +GG      G GG +        ++ G YGG   +
Sbjct: 548 GGHSGGSGGNYGGGSGS-GGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEA 606

Query: 307 SSYGSG 312
           S  G G
Sbjct: 607 SGSGGG 612



 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 48/131 (36%), Positives = 58/131 (44%), Gaps = 19/131 (14%)

Query: 196 RSGSG-NFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGF----GNDGKNFG 250
           R GSG ++G G  GG  G+  +G GG+  G GG  GS GGS   Y G     G  G  +G
Sbjct: 478 RGGSGGSYGRGSRGGSGGS--YGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYG 535

Query: 251 GGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGS------- 303
           GGS     G+            GGN+GG      G GG Y     ++GG GGS       
Sbjct: 536 GGSG---GGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGF 592

Query: 304 --SSSSSYGSG 312
              S  SYG G
Sbjct: 593 GGESGGSYGGG 603



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 50/134 (37%), Positives = 59/134 (44%), Gaps = 23/134 (17%)

Query: 191 SSQRSRSGSGNFGGGRGGG---------FSGNDNFGHGGNFSGCGGFGGSHGGSADGYNG 241
           SS  SRSG G  GGG G G         FS +   G GG FS   G+GG       G  G
Sbjct: 8   SSYLSRSGGGG-GGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGG-SSRVCGRGG 65

Query: 242 FGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYG 301
            G+ G ++GGGS     G   + SS    + GG  GG R      GG Y +     GG+G
Sbjct: 66  GGSFGYSYGGGS-----GGGFSASS----LGGGFGGGSRGFGGASGGGYSSSGGFGGGFG 116

Query: 302 GSSS---SSSYGSG 312
           G S       YGSG
Sbjct: 117 GGSGGGFGGGYGSG 130



 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 46/133 (34%), Positives = 60/133 (45%), Gaps = 14/133 (10%)

Query: 186 MASAPSSQRSRSGSGNFGGGRGGG-FSGNDNFGHGGN----FSGCGGFGGSHGGSADGYN 240
           + S  S + S S   + GGG GGG FS +  +G G +      G G FG S+GG + G  
Sbjct: 22  LGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGF 81

Query: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGG-GQYFAKPQNQGG 299
              + G  FGGGS    FG  +    +     GG FGG     +GGG G  F      GG
Sbjct: 82  SASSLGGGFGGGS--RGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGF------GG 133

Query: 300 YGGSSSSSSYGSG 312
           +GG    +  G G
Sbjct: 134 FGGFGGGAGGGDG 146



 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 41/112 (36%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 203 GGGRGGGFSGNDNFGHGGNFSGCGGFG-GSHGGSADGYNGFGNDGKNFGGGS-SYNDFGN 260
           GG      SG    G GG     G +G GS GGS   Y G G  G  +GGGS S    G 
Sbjct: 460 GGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGG-GGSGGGYGGGSGSRGGSGG 518

Query: 261 CNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSSSSSYGSG 312
                S  G   GG +GG     + GG        + G YGG S S   GSG
Sbjct: 519 SYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGG-GSG 569



 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 41/122 (33%), Positives = 50/122 (40%), Gaps = 15/122 (12%)

Query: 172 GHNCEVRKALSKQKMASAPSSQRSRSGSGNFGG------GRGGGFSGNDNF--GHGGNFS 223
           G    +R + S+   +         S S  +GG      GRGGG S   ++  G GG FS
Sbjct: 23  GSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFS 82

Query: 224 GC---GGFGGSH----GGSADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNF 276
                GGFGG      G S  GY+  G  G  FGGGS     G   +    FG   GG  
Sbjct: 83  ASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGAG 142

Query: 277 GG 278
           GG
Sbjct: 143 GG 144



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 23/42 (54%), Positives = 24/42 (57%)

Query: 197 SGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADG 238
           S SG FGGG GGG  G    G+G  F G GGFGG  GG   G
Sbjct: 106 SSSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGAGGGDGG 147


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,878,877
Number of Sequences: 37866
Number of extensions: 729533
Number of successful extensions: 10312
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 198
Number of HSP's that attempted gapping in prelim test: 2810
Number of HSP's gapped (non-prelim): 2685
length of query: 321
length of database: 18,247,518
effective HSP length: 102
effective length of query: 219
effective length of database: 14,385,186
effective search space: 3150355734
effective search space used: 3150355734
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.