Guide to the Human Genome
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Name: C6orf26 Sequence: fasta or formatted (178aa) NCBI GI: 89001111
Description:

hypothetical protein LOC401251

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         10           1
 C cysteine            1.7          3           1
 D aspartate           2.8          5           1
 E glutamate           7.3         13           2
 F phenylalanine       2.8          5           2
 G glycine             8.4         15           2
 H histidine           2.8          5           1
 I isoleucine          1.7          3           1
 K lysine              3.9          7           1
 L leucine            13.5         24           3
 M methionine          1.7          3           1
 N asparagine          2.8          5           1
 P proline             6.7         12           2
 Q glutamine          13.5         24           3
 R arginine            7.9         14           3
 S serine              6.2         11           2
 T threonine           4.5          8           2
 V valine              3.4          6           1
 W tryptophan          2.2          4           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC401251 
C9orf140              0.076   tumor specificity and mitosis phase-dependent expre...
ZNF716                0.073   PREDICTED: zinc finger protein 716 
C19orf21              0.044   hypothetical protein LOC126353 
LOC283685             0.029   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.029   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MLL2                  0.023   myeloid/lymphoid or mixed-lineage leukemia 2 
LOC727832             0.020   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.020   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.020   PREDICTED: Putative golgin subfamily A member 6-lik...
TCHH                  0.020   trichohyalin 
TBP                   0.020   TATA box binding protein 
DCAF5                 0.018   WD repeat domain 22 
AR                    0.018   androgen receptor isoform 1 
LOC645202             0.018   PREDICTED: hypothetical protein LOC645202 
SETD2                 0.018   SET domain containing 2 
ZNF236                0.018   zinc finger protein 236 
C12orf48              0.018   hypothetical protein LOC55010 
LOC651807             0.015   PREDICTED: hypothetical protein 
LOC400352             0.015   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.015   PREDICTED: similar to Putative golgin subfamily A m...
FAM186A               0.015   family with sequence similarity 186, member A [Homo...
HDAC4                 0.015   histone deacetylase 4 
NUMA1                 0.015   nuclear mitotic apparatus protein 1 
ZHX1                  0.015   zinc fingers and homeoboxes 1 
ZHX1                  0.015   zinc fingers and homeoboxes 1 
ZNF853                0.015   zinc finger protein 853 
MAML2                 0.015   mastermind-like 2 
PSPC1                 0.015   paraspeckle protein 1 
MED15                 0.015   mediator complex subunit 15 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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