Guide to the Human Genome
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Name: C9orf140 Sequence: fasta or formatted (394aa) NCBI GI: 190886454
Description:

tumor specificity and mitosis phase-dependent expression protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         53           3
 C cysteine            2.0          8           1
 D aspartate           4.1         16           2
 E glutamate           7.9         31           1
 F phenylalanine       2.0          8           1
 G glycine             7.4         29           2
 H histidine           0.5          2           1
 I isoleucine          1.8          7           1
 K lysine              2.3          9           1
 L leucine            11.7         46           2
 M methionine          1.5          6           2
 N asparagine          0.3          1           1
 P proline            10.4         41           5
 Q glutamine           7.1         28           3
 R arginine           11.4         45           3
 S serine              7.1         28           3
 T threonine           3.8         15           1
 V valine              4.1         16           1
 W tryptophan          0.8          3           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor specificity and mitosis phase-dependent expre... 
ZNF716                0.384   PREDICTED: zinc finger protein 716 
C6orf26               0.034   hypothetical protein LOC401251 
KIAA0754              0.030   hypothetical protein LOC643314 
TBX2                  0.026   T-box 2 
MAP7                  0.026   microtubule-associated protein 7 
C19orf61              0.025   hypothetical protein LOC56006 
SAMD1                 0.025   sterile alpha motif domain containing 1 
CDKN1C                0.025   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.025   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.025   cyclin-dependent kinase inhibitor 1C isoform a 
MAP7D1                0.025   MAP7 domain containing 1 
WNK2                  0.024   WNK lysine deficient protein kinase 2 
LOC645321             0.024   PREDICTED: hypothetical protein 
LOC645321             0.024   PREDICTED: hypothetical protein 
KDM6B                 0.024   lysine (K)-specific demethylase 6B 
DACT3                 0.024   thymus expressed gene 3-like 
NES                   0.022   nestin 
RFX1                  0.022   regulatory factor X1 
MARCH11               0.022   membrane-associated ring finger (C3HC4) 11 
C17orf96              0.021   hypothetical protein LOC100170841 
PRR12                 0.021   proline rich 12 
MARCKS                0.020   myristoylated alanine-rich protein kinase C substra...
TMEM88B               0.020   PREDICTED: hypothetical protein LOC643965 
TMEM88B               0.020   PREDICTED: hypothetical protein LOC643965 
CC2D1A                0.020   coiled-coil and C2 domain containing 1A 
NHS                   0.020   Nance-Horan syndrome protein isoform 1 
BZRAP1                0.020   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.020   peripheral benzodiazepine receptor-associated prote...
GGN                   0.020   gametogenetin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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