Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C12orf48 Sequence: fasta or formatted (498aa) NCBI GI: 90819239
Description:

hypothetical protein LOC55010

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         29           2
 C cysteine            1.8          9           1
 D aspartate           6.8         34           2
 E glutamate           4.8         24           2
 F phenylalanine       2.8         14           2
 G glycine             4.8         24           2
 H histidine           2.0         10           3
 I isoleucine          7.0         35           2
 K lysine              9.2         46           2
 L leucine            10.0         50           2
 M methionine          1.6          8           1
 N asparagine          7.8         39           2
 P proline             4.2         21           3
 Q glutamine           4.0         20           1
 R arginine            4.8         24           1
 S serine              8.4         42           2
 T threonine           5.4         27           2
 V valine              5.2         26           2
 W tryptophan          0.2          1           1
 Y tyrosine            3.0         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55010 
KIAA1107              0.009   hypothetical protein LOC23285 
GOLGA4                0.008   golgi autoantigen, golgin subfamily a, 4 
CTAGE1                0.006   cutaneous T-cell lymphoma-associated antigen 1 isofo...
COL28A1               0.006   collagen, type XXVIII precursor 
C6orf26               0.006   hypothetical protein LOC401251 
CENPE                 0.005   centromere protein E 
NCOR2                 0.005   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.005   nuclear receptor co-repressor 2 isoform 1 
RFPL1                 0.005   ret finger protein-like 1 
LOC643854             0.005   hypothetical protein LOC643854 
SCLT1                 0.005   sodium channel associated protein 1 
SIPA1L1               0.004   signal-induced proliferation-associated 1 like 1 [Hom...
LOC441294             0.004   hypothetical protein LOC441294 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press