Guide to the Human Genome
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Search of human proteins with 88703043

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|88703043 sorting nexin 6 isoform a [Homo sapiens]
         (290 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|88703041 sorting nexin 6 isoform b [Homo sapiens]                  568   e-162
gi|88703043 sorting nexin 6 isoform a [Homo sapiens]                  568   e-162
gi|72534838 sorting nexin 6B [Homo sapiens]                           398   e-111
gi|23111047 sorting nexin 5 [Homo sapiens]                            386   e-107
gi|7657599 sorting nexin 5 [Homo sapiens]                             386   e-107
gi|23111032 sorting nexin 1 isoform b [Homo sapiens]                   54   1e-07
gi|23111034 sorting nexin 1 isoform a [Homo sapiens]                   54   1e-07
gi|23111038 sorting nexin 2 [Homo sapiens]                             50   3e-06
gi|71061468 centromere protein E [Homo sapiens]                        44   2e-04
gi|21536423 amphiphysin isoform 2 [Homo sapiens]                       42   6e-04
gi|4502081 amphiphysin isoform 1 [Homo sapiens]                        42   6e-04
gi|23111036 sorting nexin 1 isoform c [Homo sapiens]                   42   8e-04
gi|122891870 melanoma inhibitory activity family, member 3 [Homo...    39   0.004
gi|21536417 bridging integrator 1 isoform 10 [Homo sapiens]            38   0.009
gi|21536415 bridging integrator 1 isoform 9 [Homo sapiens]             38   0.009
gi|21536413 bridging integrator 1 isoform 7 [Homo sapiens]             38   0.009
gi|21536411 bridging integrator 1 isoform 6 [Homo sapiens]             38   0.009
gi|21536409 bridging integrator 1 isoform 5 [Homo sapiens]             38   0.009
gi|21536407 bridging integrator 1 isoform 4 [Homo sapiens]             38   0.009
gi|4757748 bridging integrator 1 isoform 8 [Homo sapiens]              38   0.009
gi|21389505 janus kinase and microtubule interacting protein 1 i...    35   0.077
gi|150456473 janus kinase and microtubule interacting protein 1 ...    35   0.077
gi|194294540 sorting nexin 7 isoform a [Homo sapiens]                  35   0.077
gi|109255234 centrosomal protein 290kDa [Homo sapiens]                 34   0.17 
gi|51317366 myosin XVIIIB [Homo sapiens]                               34   0.17 
gi|196115290 glial fibrillary acidic protein isoform 2 [Homo sap...    33   0.22 
gi|110611218 ribosome binding protein 1 [Homo sapiens]                 33   0.29 
gi|110611220 ribosome binding protein 1 [Homo sapiens]                 33   0.29 
gi|239743762 PREDICTED: hypothetical protein XP_002342954 [Homo ...    33   0.29 
gi|93102364 SWAP-70 protein [Homo sapiens]                             33   0.29 

>gi|88703041 sorting nexin 6 isoform b [Homo sapiens]
          Length = 418

 Score =  568 bits (1464), Expect = e-162
 Identities = 290/290 (100%), Positives = 290/290 (100%)

Query: 1   MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVR 60
           MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVR
Sbjct: 129 MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVR 188

Query: 61  GKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTR 120
           GKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTR
Sbjct: 189 GKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTR 248

Query: 121 SHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 180
           SHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL
Sbjct: 249 SHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 308

Query: 181 KYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEKISE 240
           KYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEKISE
Sbjct: 309 KYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEKISE 368

Query: 241 SAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGDT 290
           SAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGDT
Sbjct: 369 SAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGDT 418


>gi|88703043 sorting nexin 6 isoform a [Homo sapiens]
          Length = 290

 Score =  568 bits (1464), Expect = e-162
 Identities = 290/290 (100%), Positives = 290/290 (100%)

Query: 1   MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVR 60
           MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVR
Sbjct: 1   MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVR 60

Query: 61  GKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTR 120
           GKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTR
Sbjct: 61  GKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTR 120

Query: 121 SHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 180
           SHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL
Sbjct: 121 SHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 180

Query: 181 KYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEKISE 240
           KYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEKISE
Sbjct: 181 KYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEKISE 240

Query: 241 SAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGDT 290
           SAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGDT
Sbjct: 241 SAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGDT 290


>gi|72534838 sorting nexin 6B [Homo sapiens]
          Length = 403

 Score =  398 bits (1023), Expect = e-111
 Identities = 196/292 (67%), Positives = 246/292 (84%), Gaps = 3/292 (1%)

Query: 1   MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVR 60
           +T+EEF KMKQELEAEYLAIFKKTVAMHEVFL R+AAHP LRRD NF VFLEY QDLSVR
Sbjct: 111 VTREEFAKMKQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFFVFLEYGQDLSVR 170

Query: 61  GKNKKEKLEDFFKNMVKSADGVIV---SGVKDVDDFFEHERTFLLEYHNRVKDASAKSDR 117
           GKN+KE L  F +N+VKSAD  ++   SG+K+VDDFFEHERTFLLEYH R++DA  ++DR
Sbjct: 171 GKNRKELLGGFLRNIVKSADEALITGMSGLKEVDDFFEHERTFLLEYHTRIRDACLRADR 230

Query: 118 MTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLS 177
           + R+HK  ADDY  I ++L +LGTQ+   +   FLK++ELF++ RK+E RV++DEDLKLS
Sbjct: 231 VMRAHKCLADDYIPISAALSSLGTQEVNQLRTSFLKLAELFERLRKLEGRVASDEDLKLS 290

Query: 178 DLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEK 237
           D+L+YY+R+SQAAKDLLYRR R+L DYENANKALDKAR +N++V  AE+ QQLCCQ+FE+
Sbjct: 291 DMLRYYMRDSQAAKDLLYRRLRALADYENANKALDKARTRNREVRPAESHQQLCCQRFER 350

Query: 238 ISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGD 289
           +S+SAKQEL+DFK+RRV++FRKNL+ELAELELKHAK +  +L+N L  L G+
Sbjct: 351 LSDSAKQELMDFKSRRVSSFRKNLIELAELELKHAKASTLILRNTLVALKGE 402


>gi|23111047 sorting nexin 5 [Homo sapiens]
          Length = 404

 Score =  386 bits (991), Expect = e-107
 Identities = 184/283 (65%), Positives = 239/283 (84%)

Query: 1   MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVR 60
           MTKEEF KMKQELEAEYLA+FKKTV+ HEVFL R+++HP+L +D NFHVFLEY+QDLSVR
Sbjct: 116 MTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVR 175

Query: 61  GKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTR 120
            KN KE    FFK++VKSAD V+ +GVK+VDDFFE E+ FL+ Y+NR+KD+  K+D+MTR
Sbjct: 176 RKNTKEMFGGFFKSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTR 235

Query: 121 SHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 180
           SHK+ ADDY    + L++L  ++ T I K+ LKV+ELF+K RK+E RVS+DEDLKL++LL
Sbjct: 236 SHKNVADDYIHTAACLHSLALEEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELL 295

Query: 181 KYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEKISE 240
           +YY+   +AAKDLLYRR+++L+DYEN+NKALDKAR K+KDV  AE  QQ CCQKFE++SE
Sbjct: 296 RYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSKDVKLAEAHQQECCQKFEQLSE 355

Query: 241 SAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCL 283
           SAK+ELI+FK +RVAAFRKNL+E++ELE+KHA+ N+ LLQ+C+
Sbjct: 356 SAKEELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCI 398


>gi|7657599 sorting nexin 5 [Homo sapiens]
          Length = 404

 Score =  386 bits (991), Expect = e-107
 Identities = 184/283 (65%), Positives = 239/283 (84%)

Query: 1   MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVR 60
           MTKEEF KMKQELEAEYLA+FKKTV+ HEVFL R+++HP+L +D NFHVFLEY+QDLSVR
Sbjct: 116 MTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVR 175

Query: 61  GKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTR 120
            KN KE    FFK++VKSAD V+ +GVK+VDDFFE E+ FL+ Y+NR+KD+  K+D+MTR
Sbjct: 176 RKNTKEMFGGFFKSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTR 235

Query: 121 SHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLL 180
           SHK+ ADDY    + L++L  ++ T I K+ LKV+ELF+K RK+E RVS+DEDLKL++LL
Sbjct: 236 SHKNVADDYIHTAACLHSLALEEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELL 295

Query: 181 KYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEKISE 240
           +YY+   +AAKDLLYRR+++L+DYEN+NKALDKAR K+KDV  AE  QQ CCQKFE++SE
Sbjct: 296 RYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSKDVKLAEAHQQECCQKFEQLSE 355

Query: 241 SAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCL 283
           SAK+ELI+FK +RVAAFRKNL+E++ELE+KHA+ N+ LLQ+C+
Sbjct: 356 SAKEELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCI 398


>gi|23111032 sorting nexin 1 isoform b [Homo sapiens]
          Length = 457

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 62/285 (21%), Positives = 124/285 (43%), Gaps = 24/285 (8%)

Query: 1   MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVR 60
           MTK +  K +    AE+L   +K  A  E +L R+  HP + +D +   FLE  ++L   
Sbjct: 154 MTKVKVGK-EDSSSAEFL---EKRRAALERYLQRIVNHPTMLQDPDVREFLE-KEELPRA 208

Query: 61  GKNKKEKLEDFFKNMVKSADGVIVSGVK--DVDDFFEHERTFLLEYHNRVKDASAKSDRM 118
              +        K   K+ D V    +K  + D +FE +   +     R++   A  + +
Sbjct: 209 VGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETL 268

Query: 119 TRSHKSAADDYNRIGSSLYALG-TQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLS 177
               K  A +  +   SL  LG ++D+T + +   +++E+ +K  ++    + ++   L+
Sbjct: 269 VNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLA 328

Query: 178 DLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQK--- 234
           +LL  Y+R     +    +R ++   +++A   L K R     +L A    +L   K   
Sbjct: 329 ELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEI 388

Query: 235 -------------FEKISESAKQELIDFKTRRVAAFRKNLVELAE 266
                        FE+IS   ++E+I F+  +   F+ ++++  E
Sbjct: 389 LEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLE 433


>gi|23111034 sorting nexin 1 isoform a [Homo sapiens]
          Length = 522

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 62/285 (21%), Positives = 124/285 (43%), Gaps = 24/285 (8%)

Query: 1   MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVR 60
           MTK +  K +    AE+L   +K  A  E +L R+  HP + +D +   FLE  ++L   
Sbjct: 219 MTKVKVGK-EDSSSAEFL---EKRRAALERYLQRIVNHPTMLQDPDVREFLE-KEELPRA 273

Query: 61  GKNKKEKLEDFFKNMVKSADGVIVSGVK--DVDDFFEHERTFLLEYHNRVKDASAKSDRM 118
              +        K   K+ D V    +K  + D +FE +   +     R++   A  + +
Sbjct: 274 VGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETL 333

Query: 119 TRSHKSAADDYNRIGSSLYALG-TQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLS 177
               K  A +  +   SL  LG ++D+T + +   +++E+ +K  ++    + ++   L+
Sbjct: 334 VNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLA 393

Query: 178 DLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQK--- 234
           +LL  Y+R     +    +R ++   +++A   L K R     +L A    +L   K   
Sbjct: 394 ELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEI 453

Query: 235 -------------FEKISESAKQELIDFKTRRVAAFRKNLVELAE 266
                        FE+IS   ++E+I F+  +   F+ ++++  E
Sbjct: 454 LEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLE 498


>gi|23111038 sorting nexin 2 [Homo sapiens]
          Length = 519

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 54/264 (20%), Positives = 111/264 (42%), Gaps = 20/264 (7%)

Query: 22  KKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADG 81
           +K  A  E +L R   HP L +D +   FLE + +L      +        + + K+AD 
Sbjct: 233 EKRRAALERYLQRTVKHPTLLQDPDLRQFLE-SSELPRAVNTQALSGAGILRMVNKAADA 291

Query: 82  VIVSGVK--DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYAL 139
           V    +K  + D +FE ++        +++      + +    K  + +      S   L
Sbjct: 292 VNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAML 351

Query: 140 G-TQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRS 198
           G ++D T + +   +++E+ +K  ++    +  +    S+LL  Y+R   A K +   R 
Sbjct: 352 GNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRM 411

Query: 199 RSLVDYENANKAL----------------DKARAKNKDVLQAETSQQLCCQKFEKISESA 242
           +    +E+A   L                DK +    ++ + E   Q   + FE+IS++ 
Sbjct: 412 KCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTI 471

Query: 243 KQELIDFKTRRVAAFRKNLVELAE 266
           ++E+  F+  RV  F+  +++  E
Sbjct: 472 RKEVGRFEKERVKDFKTVIIKYLE 495


>gi|71061468 centromere protein E [Homo sapiens]
          Length = 2701

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 9/130 (6%)

Query: 48  HVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIV--SGVKDVDDFFEHERTFLLEYH 105
           H+       L     +K+ +++   + + K+ D +    S  K  D  F++ +T  +++ 
Sbjct: 771 HIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFE 830

Query: 106 NRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIE 165
            + K    +++RM +   + + +  +  SSL AL T+ S        K  EL +KTR+++
Sbjct: 831 QKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELS-------YKTQELQEKTREVQ 883

Query: 166 ARVSADEDLK 175
            R++  E LK
Sbjct: 884 ERLNEMEQLK 893


>gi|21536423 amphiphysin isoform 2 [Homo sapiens]
          Length = 653

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 180 LKYYLRESQAAKDLLYRRSRSLVDYENANKALDKAR-AKNKD---VLQAETSQQLCCQKF 235
           L  YL +    K+ + +RSR LVDY++A   L+  + +K KD   + +AE   Q   + F
Sbjct: 121 LDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVF 180

Query: 236 EKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAK 273
           E+ +   ++EL    +RRV  +      ++ LE K  K
Sbjct: 181 EEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHK 218


>gi|4502081 amphiphysin isoform 1 [Homo sapiens]
          Length = 695

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 180 LKYYLRESQAAKDLLYRRSRSLVDYENANKALDKAR-AKNKD---VLQAETSQQLCCQKF 235
           L  YL +    K+ + +RSR LVDY++A   L+  + +K KD   + +AE   Q   + F
Sbjct: 121 LDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVF 180

Query: 236 EKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAK 273
           E+ +   ++EL    +RRV  +      ++ LE K  K
Sbjct: 181 EEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHK 218


>gi|23111036 sorting nexin 1 isoform c [Homo sapiens]
          Length = 474

 Score = 41.6 bits (96), Expect = 8e-04
 Identities = 60/269 (22%), Positives = 118/269 (43%), Gaps = 40/269 (14%)

Query: 1   MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVR 60
           MTK +  K +    AE+L   +K  A  E +L R+  HP + +D +   FLE  ++L   
Sbjct: 219 MTKVKVGK-EDSSSAEFL---EKRRAALERYLQRIVNHPTMLQDPDVREFLE-KEELPRA 273

Query: 61  GKNKKEKLEDFFKNMVKSADGVIVSGVK--DVDDFFEHERTFLLEYHNRVKDASAKSDRM 118
              +        K   K+ D V    +K  + D +FE +   +     R++   A  + +
Sbjct: 274 VGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETL 333

Query: 119 TRSHKSAADDYNRIGSSLYALG-TQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLS 177
               K  A +  +   SL  LG ++D+T + +   +++E+ +K  ++    + ++   L+
Sbjct: 334 VNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLA 393

Query: 178 DLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEK 237
           +LL  Y+R       LL     ++V +E+              V Q E       + FE+
Sbjct: 394 ELLSDYIR-------LL-----AIVRWESR-------------VTQYE-------RDFER 421

Query: 238 ISESAKQELIDFKTRRVAAFRKNLVELAE 266
           IS   ++E+I F+  +   F+ ++++  E
Sbjct: 422 ISTVVRKEVIRFEKEKSKDFKNHVIKYLE 450


>gi|122891870 melanoma inhibitory activity family, member 3 [Homo
            sapiens]
          Length = 1907

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 13/151 (8%)

Query: 146  DICKFFLKVSELFDKTRK---IEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLV 202
            D  K   K  E+ D T K   +      ++++K  DL+    +  +  KD++   S +  
Sbjct: 1267 DKIKTLEKNQEILDDTAKNLRVMLESEREQNVKNQDLISENKKSIEKLKDVI---SMNAS 1323

Query: 203  DYENANKALDKARAKNKDVLQAETSQQLCCQKFEKISESAKQELIDFK------TRRVAA 256
            ++     AL++A+   + V       Q    + +K  E  +QE+ D+       + ++ +
Sbjct: 1324 EFSEVQIALNEAKLSEEKVKSECHRVQEENARLKKKKEQLQQEIEDWSKLHAELSEQIKS 1383

Query: 257  FRKNLVELAELELKHAKGNLQLLQNCLAVLN 287
            F K+  +L E+ L H   N+  L NC+  LN
Sbjct: 1384 FEKSQKDL-EVALTHKDDNINALTNCITQLN 1413


>gi|21536417 bridging integrator 1 isoform 10 [Homo sapiens]
          Length = 409

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 183 YLRESQAAKDLLYRRSRSLVDYENAN---KALDKARAKNKDVLQAETSQQLCCQK-FEKI 238
           YL +    K  + +R R LVDY++A    ++L  A+ K++  +     + +  QK FE++
Sbjct: 129 YLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEM 188

Query: 239 SESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNG 288
           +   ++EL      RV  +      +A LE    K   +L QN   VL G
Sbjct: 189 NVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVG 238


>gi|21536415 bridging integrator 1 isoform 9 [Homo sapiens]
          Length = 439

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 183 YLRESQAAKDLLYRRSRSLVDYENAN---KALDKARAKNKDVLQAETSQQLCCQK-FEKI 238
           YL +    K  + +R R LVDY++A    ++L  A+ K++  +     + +  QK FE++
Sbjct: 129 YLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEM 188

Query: 239 SESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNG 288
           +   ++EL      RV  +      +A LE    K   +L QN   VL G
Sbjct: 189 NVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVG 238


>gi|21536413 bridging integrator 1 isoform 7 [Homo sapiens]
          Length = 475

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 183 YLRESQAAKDLLYRRSRSLVDYENAN---KALDKARAKNKDVLQAETSQQLCCQK-FEKI 238
           YL +    K  + +R R LVDY++A    ++L  A+ K++  +     + +  QK FE++
Sbjct: 129 YLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEM 188

Query: 239 SESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNG 288
           +   ++EL      RV  +      +A LE    K   +L QN   VL G
Sbjct: 189 NVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVG 238


>gi|21536411 bridging integrator 1 isoform 6 [Homo sapiens]
          Length = 482

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 183 YLRESQAAKDLLYRRSRSLVDYENAN---KALDKARAKNKDVLQAETSQQLCCQK-FEKI 238
           YL +    K  + +R R LVDY++A    ++L  A+ K++  +     + +  QK FE++
Sbjct: 129 YLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEM 188

Query: 239 SESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNG 288
           +   ++EL      RV  +      +A LE    K   +L QN   VL G
Sbjct: 189 NVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVG 238


>gi|21536409 bridging integrator 1 isoform 5 [Homo sapiens]
          Length = 518

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 183 YLRESQAAKDLLYRRSRSLVDYENAN---KALDKARAKNKDVLQAETSQQLCCQK-FEKI 238
           YL +    K  + +R R LVDY++A    ++L  A+ K++  +     + +  QK FE++
Sbjct: 129 YLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEM 188

Query: 239 SESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNG 288
           +   ++EL      RV  +      +A LE    K   +L QN   VL G
Sbjct: 189 NVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVG 238


>gi|21536407 bridging integrator 1 isoform 4 [Homo sapiens]
          Length = 497

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 183 YLRESQAAKDLLYRRSRSLVDYENAN---KALDKARAKNKDVLQAETSQQLCCQK-FEKI 238
           YL +    K  + +R R LVDY++A    ++L  A+ K++  +     + +  QK FE++
Sbjct: 129 YLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEM 188

Query: 239 SESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNG 288
           +   ++EL      RV  +      +A LE    K   +L QN   VL G
Sbjct: 189 NVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVG 238


>gi|4757748 bridging integrator 1 isoform 8 [Homo sapiens]
          Length = 454

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 183 YLRESQAAKDLLYRRSRSLVDYENAN---KALDKARAKNKDVLQAETSQQLCCQK-FEKI 238
           YL +    K  + +R R LVDY++A    ++L  A+ K++  +     + +  QK FE++
Sbjct: 129 YLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEM 188

Query: 239 SESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNG 288
           +   ++EL      RV  +      +A LE    K   +L QN   VL G
Sbjct: 189 NVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVG 238


>gi|21389505 janus kinase and microtubule interacting protein 1
           isoform 2 [Homo sapiens]
          Length = 626

 Score = 35.0 bits (79), Expect = 0.077
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 27/154 (17%)

Query: 132 IGSSLYALGTQDS----TDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLKYYLRES 187
           IG  +  +G QD      D+ +F LK++EL    RK+E     D +  L+D     L+ S
Sbjct: 268 IGDMVELMGVQDQHMDERDVRRFQLKIAELNSVIRKLE-----DRNTLLADERNELLKRS 322

Query: 188 QAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEKISESAKQELI 247
           +  +  L    + LV+    NK ++K   KN+D+LQ+        Q+ E+  ++  +E +
Sbjct: 323 RETEVQL----KPLVE---KNKRMNK---KNEDLLQS-------IQRMEEKIKNLTRENV 365

Query: 248 DFKTRRVA-AFRKNLVELAELELKHAKGNLQLLQ 280
           + K +  A A  K    L +L L   +  ++ L+
Sbjct: 366 EMKEKLSAQASLKRHTSLNDLSLTRDEQEIEFLR 399


>gi|150456473 janus kinase and microtubule interacting protein 1
           isoform 1 [Homo sapiens]
          Length = 831

 Score = 35.0 bits (79), Expect = 0.077
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 27/154 (17%)

Query: 132 IGSSLYALGTQDS----TDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLKYYLRES 187
           IG  +  +G QD      D+ +F LK++EL    RK+E     D +  L+D     L+ S
Sbjct: 268 IGDMVELMGVQDQHMDERDVRRFQLKIAELNSVIRKLE-----DRNTLLADERNELLKRS 322

Query: 188 QAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFEKISESAKQELI 247
           +  +  L    + LV+    NK ++K   KN+D+LQ+        Q+ E+  ++  +E +
Sbjct: 323 RETEVQL----KPLVE---KNKRMNK---KNEDLLQS-------IQRMEEKIKNLTRENV 365

Query: 248 DFKTRRVA-AFRKNLVELAELELKHAKGNLQLLQ 280
           + K +  A A  K    L +L L   +  ++ L+
Sbjct: 366 EMKEKLSAQASLKRHTSLNDLSLTRDEQEIEFLR 399


>gi|194294540 sorting nexin 7 isoform a [Homo sapiens]
          Length = 451

 Score = 35.0 bits (79), Expect = 0.077
 Identities = 55/260 (21%), Positives = 105/260 (40%), Gaps = 15/260 (5%)

Query: 26  AMHEVFLCRVAAHPILRRDLNFHVFLEYNQ-DLSVRGKNKKEKLEDFFKNMVKSADGVIV 84
           A+H+ FL R+A HP L  + +F +FL     +LS   K     L    + +   A    +
Sbjct: 184 ALHK-FLNRIADHPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSRMGQTVRAVASS--M 240

Query: 85  SGVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDS 144
            GVK+  + F     F+  +  ++      S R+ +  +   D+    G  ++ L +   
Sbjct: 241 RGVKNRPEEFMEMNNFIELFSQKINLIDKISQRIYKEEREYFDEMKEYG-PIHILWSASE 299

Query: 145 TDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDY 204
            D+      V+   D+  K   +  +     L  ++  Y+  S+    ++ RR +   + 
Sbjct: 300 EDLVDTLKDVASCIDRCCKATEKRMSGLSEALLPVVHEYVLYSEMLMGVMKRRDQIQAEL 359

Query: 205 ENANKALDKARAKNKDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVEL 264
           ++  + L   +A + D+L  E        K E   E A   L      R     +N ++L
Sbjct: 360 DSKVEVLTYKKA-DTDLLPEEIG------KLEDKVECANNAL-KADWERWKQNMQNDIKL 411

Query: 265 AELELKHAKGNLQLLQNCLA 284
           A  ++  A+ N+   + CLA
Sbjct: 412 AFTDM--AEENIHYYEQCLA 429


>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
          Length = 2479

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 19/149 (12%)

Query: 159  DKTRKIEARVS-----ADEDLKLSDLLKYYLRESQAA---------KDLLYRRSRSLVDY 204
            D+ +K++A V       D+  K S  LK  L+  + A         ++L+ R    L   
Sbjct: 1678 DEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNLVERLKSQLALK 1737

Query: 205  ENANKALDKARAKNKDVLQAETSQQLCCQKFEKISESAKQELIDFKTR----RVAAFRKN 260
            E   KAL +A  + +  + A   +++     +K +    Q+++D  TR    +V    +N
Sbjct: 1738 EKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQVEDLNEN 1797

Query: 261  LVELAELELKHAKGNLQLLQNCLAVLNGD 289
            L++L E  LK +K     L + L  LN +
Sbjct: 1798 LLKLKE-ALKTSKNRENSLTDNLNDLNNE 1825


>gi|51317366 myosin XVIIIB [Homo sapiens]
          Length = 2567

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 15/172 (8%)

Query: 114  KSDRMTRSHKSAADDYNRI---GSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSA 170
            K+D + R  +   DD N +      L A    D   I +  L++ E   +  K++     
Sbjct: 1889 KADLLKRIDEDQ-DDLNELMQKHKDLIAQSAADIGQIQELQLQLEEAKKEKHKLQ----- 1942

Query: 171  DEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQL 230
             E L+++ +   YL +S   + ++ R+   + D EN  +   K + K  +VL       L
Sbjct: 1943 -EQLQVAQMRIEYLEQSTVDRAIVSRQEAVICDLENKTE-FQKVQIKRFEVLVIRLRDSL 2000

Query: 231  CCQKFE----KISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQL 278
                 E      SES ++E   +  RR+   + ++ EL + E + ++  ++L
Sbjct: 2001 IKMGEELSQAATSESQQRESSQYYQRRLEELKADMEELVQREAEASRRCMEL 2052


>gi|196115290 glial fibrillary acidic protein isoform 2 [Homo
           sapiens]
          Length = 431

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 9/153 (5%)

Query: 110 DASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVS 169
           DA+A++  + R  K  A+DY R   SL        T   +     +E  ++  + +    
Sbjct: 266 DAAARNAELLRQAKHEANDYRRQLQSL--------TCDLESLRGTNESLERQMREQEERH 317

Query: 170 ADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQ- 228
             E     + L     E Q+ KD + R  +   D  N   ALD   A  + +L+ E ++ 
Sbjct: 318 VREAASYQEALARLEEEGQSLKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRI 377

Query: 229 QLCCQKFEKISESAKQELIDFKTRRVAAFRKNL 261
            +  Q F  +     +   D +  +V  + K+L
Sbjct: 378 TIPVQTFSNLQIRGGKSTKDGENHKVTRYLKSL 410


>gi|110611218 ribosome binding protein 1 [Homo sapiens]
          Length = 977

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 38/187 (20%), Positives = 83/187 (44%), Gaps = 15/187 (8%)

Query: 107 RVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQ----DSTDICKFFLKVSELFDKTR 162
           R ++ +A   RM  S++    +  ++   +  L  Q     +T + +   + S L D   
Sbjct: 318 REQEITAVQARMQASYREHVKEVQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALN 377

Query: 163 KIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALD-KARAKNKDV 221
           +  ++V + ++ +L+ L +     S+ +K+L+  +S ++   E   KAL+ KA A  K V
Sbjct: 378 QATSQVESKQNAELAKLRQEL---SKVSKELV-EKSEAVRQDEQQRKALEAKAAAFEKQV 433

Query: 222 LQAETSQQLCCQKFEKISESAKQELIDFKTRRVA------AFRKNLVELAELELKHAKGN 275
           LQ + S +   +  +K  +   +EL   ++   +        ++   ++AEL  K     
Sbjct: 434 LQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSE 493

Query: 276 LQLLQNC 282
            ++   C
Sbjct: 494 AEVRSKC 500


>gi|110611220 ribosome binding protein 1 [Homo sapiens]
          Length = 977

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 38/187 (20%), Positives = 83/187 (44%), Gaps = 15/187 (8%)

Query: 107 RVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQ----DSTDICKFFLKVSELFDKTR 162
           R ++ +A   RM  S++    +  ++   +  L  Q     +T + +   + S L D   
Sbjct: 318 REQEITAVQARMQASYREHVKEVQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALN 377

Query: 163 KIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALD-KARAKNKDV 221
           +  ++V + ++ +L+ L +     S+ +K+L+  +S ++   E   KAL+ KA A  K V
Sbjct: 378 QATSQVESKQNAELAKLRQEL---SKVSKELV-EKSEAVRQDEQQRKALEAKAAAFEKQV 433

Query: 222 LQAETSQQLCCQKFEKISESAKQELIDFKTRRVA------AFRKNLVELAELELKHAKGN 275
           LQ + S +   +  +K  +   +EL   ++   +        ++   ++AEL  K     
Sbjct: 434 LQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSE 493

Query: 276 LQLLQNC 282
            ++   C
Sbjct: 494 AEVRSKC 500


>gi|239743762 PREDICTED: hypothetical protein XP_002342954 [Homo
           sapiens]
          Length = 183

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 12/93 (12%)

Query: 184 LRESQAAKDLLYRRSRSLVDYENANKALDKAR----AKNKDVLQAE----TSQQLCCQKF 235
           L+  Q   D+L ++ +   D   A K    ++    AK+  VLQ E       Q  C+K 
Sbjct: 42  LKADQLKMDILIKKLKQKFDDLTAEKEALSSKCVNLAKDNQVLQQEFLSMKKVQQQCEKL 101

Query: 236 EKISESAKQELIDFKTRRVAAFRKNLVELAELE 268
           E+  +  K+E+++ KT        N VEL++L+
Sbjct: 102 EEDKKMLKEEILNLKTH----MENNRVELSKLQ 130


>gi|93102364 SWAP-70 protein [Homo sapiens]
          Length = 585

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 177 SDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQKFE 236
           S  L+ YL+  +  +D+  +   +L D   A +  +  R     +L+ E+S++   +K+ 
Sbjct: 409 SSELEQYLQRVRELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWH 468

Query: 237 -------KISESAKQELIDFKTRRVAAFRKNLVELAELELK 270
                  + +E+ KQEL + +  +  A ++ + +L +LEL+
Sbjct: 469 LEQQQAIQTTEAEKQELENQRVLKEQALQEAMEQLEQLELE 509



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 44/226 (19%), Positives = 92/226 (40%), Gaps = 32/226 (14%)

Query: 55  QDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDASAK 114
           ++L    ++K+++LE   K + ++A        K +    E +  F  E   R K    +
Sbjct: 342 KELQAANESKQQELEAVRKKLEEAASRAAEEEKKRLQTQVELQARFSTELE-REKLIRQQ 400

Query: 115 SDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDK----------TRKI 164
            +       S  + Y            Q   ++   +LK+ E  +            RK+
Sbjct: 401 MEEQVAQKSSELEQY-----------LQRVRELEDMYLKLQEALEDERQARQDEETVRKL 449

Query: 165 EARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVL-Q 223
           +AR+  +E  K ++L K++L + QA +     +     + EN     ++A  +  + L Q
Sbjct: 450 QARLLEEESSKRAELEKWHLEQQQAIQTTEAEKQ----ELENQRVLKEQALQEAMEQLEQ 505

Query: 224 AETSQQLCCQKFEKISESAKQELIDFKTRR---VAAFRKNLVELAE 266
            E  ++   +++E++ +  K E+   KT+      A  + L+ L E
Sbjct: 506 LELERKQALEQYEEVKK--KLEMATNKTKSWKDKVAHHEGLIRLIE 549


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,699,039
Number of Sequences: 37866
Number of extensions: 327776
Number of successful extensions: 1275
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1244
Number of HSP's gapped (non-prelim): 106
length of query: 290
length of database: 18,247,518
effective HSP length: 101
effective length of query: 189
effective length of database: 14,423,052
effective search space: 2725956828
effective search space used: 2725956828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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