Guide to the Human Genome
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Name: EIF3J Sequence: fasta or formatted (258aa) NCBI GI: 83281438
Description:

eukaryotic translation initiation factor 3, subunit 1 alpha, 35kDa

Referenced in:

Translation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         20           7
 C cysteine            0.8          2           1
 D aspartate          11.6         30           5
 E glutamate          12.8         33           2
 F phenylalanine       2.3          6           1
 G glycine             7.4         19           4
 H histidine           0.0          0           0
 I isoleucine          3.5          9           1
 K lysine             14.7         38           5
 L leucine             7.4         19           2
 M methionine          1.6          4           1
 N asparagine          1.9          5           2
 P proline             2.7          7           1
 Q glutamine           3.9         10           2
 R arginine            3.1          8           1
 S serine              5.0         13           2
 T threonine           3.1          8           1
 V valine              6.2         16           2
 W tryptophan          1.2          3           1
 Y tyrosine            3.1          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eukaryotic translation initiation factor 3, subunit ... 
EIF5B                 0.055   eukaryotic translation initiation factor 5B 
LOC100294088          0.049   PREDICTED: hypothetical protein, partial 
NEFH                  0.045   neurofilament, heavy polypeptide 200kDa 
TRDN                  0.045   triadin 
WDR87                 0.045   NYD-SP11 protein 
NPM1                  0.043   nucleophosmin 1 isoform 3 
NPM1                  0.043   nucleophosmin 1 isoform 1 
NCL                   0.043   nucleolin 
LRRIQ1                0.043   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.043   leucine-rich repeats and IQ motif containing 1 isof...
RGAG4                 0.043   retrotransposon gag domain containing 4 
UPF2                  0.041   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.041   UPF2 regulator of nonsense transcripts homolog [Homo...
MAP1B                 0.041   microtubule-associated protein 1B 
PELP1                 0.041   proline, glutamic acid and leucine rich protein 1 [...
ANKRD11               0.039   ankyrin repeat domain 11 
CCAR1                 0.039   cell-cycle and apoptosis regulatory protein 1 
KIF3B                 0.039   kinesin family member 3B 
LOC283685             0.039   PREDICTED: golgi autoantigen, golgin subfamily a-li...
RTF1                  0.039   Paf1/RNA polymerase II complex component 
CHAF1A                0.039   chromatin assembly factor 1, subunit A (p150) 
BAT2D1                0.039   HBxAg transactivated protein 2 
LOC727832             0.037   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.037   PREDICTED: golgi autoantigen, golgin subfamily a-li...
GON4L                 0.037   gon-4-like isoform a 
CCDC34                0.037   coiled-coil domain containing 34 isoform 1 
CCDC34                0.037   coiled-coil domain containing 34 isoform 2 
PHF14                 0.037   PHD finger protein 14 isoform 2 
PHF14                 0.037   PHD finger protein 14 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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