TRIM54 36303

Name: TRIM54	Sequence: fasta or formatted (358aa)		NCBI GI: 78482626
Description: ring finger protein 30 isoform 2		Referenced in: Tripartite Motif Family
Other entries for this name: alt prot [400aa] ring finger protein 30 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.1 22 1 C cysteine 4.2 15 1 D aspartate 3.6 13 1 E glutamate 12.3 44 4 F phenylalanine 2.5 9 1 G glycine 6.1 22 2 H histidine 2.8 10 1 I isoleucine 4.5 16 2 K lysine 5.0 18 1 L leucine 9.8 35 2 M methionine 3.1 11 1 N asparagine 3.4 12 1 P proline 5.0 18 1 Q glutamine 6.7 24 2 R arginine 6.1 22 2 S serine 7.0 25 2 T threonine 2.5 9 2 V valine 7.0 25 2 W tryptophan 0.3 1 1 Y tyrosine 2.0 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 ring finger protein 30 isoform 2 TRIM54 0.971 ring finger protein 30 isoform 1 TRIM55 0.617 tripartite motif-containing 55 isoform 3 TRIM55 0.617 tripartite motif-containing 55 isoform 1 TRIM55 0.617 tripartite motif-containing 55 isoform 2 TRIM63 0.574 muscle specific ring finger protein 1 TRIM55 0.432 tripartite motif-containing 55 isoform 4 TRIM36 0.179 tripartite motif-containing 36 isoform 1 TRIM46 0.172 tripartite motif-containing 46 MID1 0.152 midline 1 MID1 0.152 midline 1 MID1 0.152 midline 1 MID2 0.144 midline 2 isoform 2 MID2 0.144 midline 2 isoform 1 TRIM3 0.114 tripartite motif-containing 3 TRIM3 0.114 tripartite motif-containing 3 TRIM67 0.103 tripartite motif-containing 67 TRIM2 0.100 tripartite motif-containing 2 isoform 2 TRIM2 0.100 tripartite motif-containing 2 isoform 1 TRIM59 0.100 tripartite motif-containing 59 FSD2 0.100 fibronectin type III and SPRY domain containing 2 [H... TRIM13 0.099 ret finger protein 2 isoform 2 TRIM13 0.099 ret finger protein 2 isoform 1 TRIM13 0.099 ret finger protein 2 isoform 1 TRIM13 0.099 ret finger protein 2 isoform 1 TRIM9 0.096 tripartite motif protein 9 isoform 2 TRIM9 0.096 tripartite motif protein 9 isoform 1 TRIM27 0.083 ret finger protein TRIM17 0.082 tripartite motif-containing 17 isoform 1 TRIM17 0.082 tripartite motif-containing 17 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.