TRIM55 26501

Name: TRIM55	Sequence: fasta or formatted (548aa)		NCBI GI: 34878836
Description: tripartite motif-containing 55 isoform 1		Referenced in: Tripartite Motif Family
Other entries for this name: alt prot [540aa] tripartite motif-containing 55 isoform 2 alt prot [452aa] tripartite motif-containing 55 isoform 3 alt prot [241aa] tripartite motif-containing 55 isoform 4
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.0 44 5 C cysteine 3.3 18 2 D aspartate 3.6 20 1 E glutamate 13.3 73 5 F phenylalanine 3.1 17 1 G glycine 6.4 35 2 H histidine 2.0 11 1 I isoleucine 4.6 25 2 K lysine 5.8 32 2 L leucine 6.8 37 2 M methionine 1.8 10 1 N asparagine 4.0 22 1 P proline 6.8 37 3 Q glutamine 5.5 30 2 R arginine 4.0 22 1 S serine 7.3 40 2 T threonine 5.1 28 2 V valine 6.0 33 2 W tryptophan 0.4 2 1 Y tyrosine 2.2 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif-containing 55 isoform 1 TRIM55 0.925 tripartite motif-containing 55 isoform 2 TRIM55 0.753 tripartite motif-containing 55 isoform 3 TRIM54 0.397 ring finger protein 30 isoform 2 TRIM54 0.378 ring finger protein 30 isoform 1 TRIM63 0.372 muscle specific ring finger protein 1 TRIM55 0.363 tripartite motif-containing 55 isoform 4 TRIM36 0.119 tripartite motif-containing 36 isoform 1 TRIM46 0.109 tripartite motif-containing 46 MID1 0.100 midline 1 MID1 0.100 midline 1 MID1 0.100 midline 1 MID2 0.100 midline 2 isoform 2 MID2 0.100 midline 2 isoform 1 TRIM13 0.063 ret finger protein 2 isoform 2 TRIM13 0.063 ret finger protein 2 isoform 1 TRIM13 0.063 ret finger protein 2 isoform 1 TRIM13 0.063 ret finger protein 2 isoform 1 TRIM59 0.062 tripartite motif-containing 59 TRIM31 0.059 tripartite motif protein 31 TRIM3 0.058 tripartite motif-containing 3 TRIM3 0.058 tripartite motif-containing 3 CMYA5 0.051 cardiomyopathy associated 5 TRIM2 0.051 tripartite motif-containing 2 isoform 2 TRIM2 0.051 tripartite motif-containing 2 isoform 1 TRIM4 0.049 tripartite motif protein TRIM4 isoform beta FSD1L 0.049 fibronectin type III and SPRY domain containing 1-li... TRIM67 0.049 tripartite motif-containing 67 TRIM62 0.048 tripartite motif-containing 62 TRIM39 0.048 tripartite motif-containing 39 isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.