TRIM54 36304

Name: TRIM54	Sequence: fasta or formatted (400aa)		NCBI GI: 78482627
Description: ring finger protein 30 isoform 1		Referenced in: Tripartite Motif Family
Other entries for this name: alt prot [358aa] ring finger protein 30 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 23 1 C cysteine 4.2 17 1 D aspartate 4.2 17 1 E glutamate 11.2 45 4 F phenylalanine 2.2 9 1 G glycine 5.8 23 2 H histidine 2.5 10 1 I isoleucine 4.8 19 2 K lysine 5.0 20 2 L leucine 10.5 42 2 M methionine 2.8 11 1 N asparagine 3.5 14 1 P proline 5.5 22 2 Q glutamine 6.5 26 2 R arginine 5.8 23 2 S serine 7.8 31 3 T threonine 3.5 14 2 V valine 6.2 25 2 W tryptophan 0.2 1 1 Y tyrosine 2.0 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 ring finger protein 30 isoform 1 TRIM54 0.867 ring finger protein 30 isoform 2 TRIM55 0.524 tripartite motif-containing 55 isoform 3 TRIM55 0.524 tripartite motif-containing 55 isoform 1 TRIM55 0.524 tripartite motif-containing 55 isoform 2 TRIM63 0.487 muscle specific ring finger protein 1 TRIM55 0.360 tripartite motif-containing 55 isoform 4 TRIM36 0.134 tripartite motif-containing 36 isoform 1 MID1 0.129 midline 1 MID1 0.129 midline 1 MID1 0.129 midline 1 MID2 0.128 midline 2 isoform 2 MID2 0.128 midline 2 isoform 1 TRIM46 0.126 tripartite motif-containing 46 TRIM59 0.080 tripartite motif-containing 59 TRIM3 0.079 tripartite motif-containing 3 TRIM3 0.079 tripartite motif-containing 3 TRIM13 0.078 ret finger protein 2 isoform 2 TRIM13 0.078 ret finger protein 2 isoform 1 TRIM13 0.078 ret finger protein 2 isoform 1 TRIM13 0.078 ret finger protein 2 isoform 1 TRIM2 0.068 tripartite motif-containing 2 isoform 2 TRIM2 0.068 tripartite motif-containing 2 isoform 1 TRIM67 0.066 tripartite motif-containing 67 FSD2 0.065 fibronectin type III and SPRY domain containing 2 [H... TRIM4 0.054 tripartite motif protein TRIM4 isoform alpha FSD1L 0.054 fibronectin type III and SPRY domain containing 1-li... FSD1L 0.054 fibronectin type III and SPRY domain containing 1-l... TRIM34 0.052 tripartite motif protein 34 isoform 3 TRIM34 0.052 tripartite motif protein 34 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.