TRIM55 26503

Name: TRIM55	Sequence: fasta or formatted (241aa)		NCBI GI: 34878852
Description: tripartite motif-containing 55 isoform 4		Referenced in: Tripartite Motif Family
Other entries for this name: alt prot [540aa] tripartite motif-containing 55 isoform 2 alt prot [548aa] tripartite motif-containing 55 isoform 1 alt prot [452aa] tripartite motif-containing 55 isoform 3
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 14 3 C cysteine 5.8 14 1 D aspartate 4.1 10 1 E glutamate 7.9 19 3 F phenylalanine 3.7 9 1 G glycine 5.8 14 2 H histidine 2.9 7 1 I isoleucine 6.2 15 2 K lysine 5.0 12 2 L leucine 8.3 20 2 M methionine 2.1 5 1 N asparagine 4.6 11 1 P proline 5.8 14 2 Q glutamine 6.2 15 2 R arginine 5.0 12 1 S serine 8.7 21 1 T threonine 4.1 10 2 V valine 5.4 13 2 W tryptophan 0.4 1 1 Y tyrosine 2.1 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif-containing 55 isoform 4 TRIM55 0.829 tripartite motif-containing 55 isoform 3 TRIM55 0.829 tripartite motif-containing 55 isoform 1 TRIM55 0.829 tripartite motif-containing 55 isoform 2 TRIM54 0.636 ring finger protein 30 isoform 2 TRIM54 0.594 ring finger protein 30 isoform 1 TRIM63 0.577 muscle specific ring finger protein 1 TRIM36 0.179 tripartite motif-containing 36 isoform 1 MID1 0.154 midline 1 MID1 0.154 midline 1 MID1 0.154 midline 1 TRIM46 0.154 tripartite motif-containing 46 MID2 0.145 midline 2 isoform 2 MID2 0.145 midline 2 isoform 1 TRIM59 0.128 tripartite motif-containing 59 TRIM13 0.118 ret finger protein 2 isoform 2 TRIM13 0.118 ret finger protein 2 isoform 1 TRIM13 0.118 ret finger protein 2 isoform 1 TRIM13 0.118 ret finger protein 2 isoform 1 TRIM2 0.109 tripartite motif-containing 2 isoform 2 TRIM2 0.109 tripartite motif-containing 2 isoform 1 TRIM3 0.103 tripartite motif-containing 3 TRIM3 0.103 tripartite motif-containing 3 TRIM31 0.093 tripartite motif protein 31 TRIM17 0.086 tripartite motif-containing 17 isoform 3 TRIM17 0.086 tripartite motif-containing 17 isoform 1 TRIM17 0.086 tripartite motif-containing 17 isoform 1 TRIM34 0.086 tripartite motif protein 34 isoform 3 TRIM34 0.086 tripartite motif protein 34 isoform 1 TRIM34 0.086 tripartite motif protein 34 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.