Guide to the Human Genome
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Name: TRIM55 Sequence: fasta or formatted (241aa) NCBI GI: 34878852
Description:

tripartite motif-containing 55 isoform 4

Referenced in:

Tripartite Motif Family

Other entries for this name:
alt prot [540aa] tripartite motif-containing 55 isoform 2
alt prot [548aa] tripartite motif-containing 55 isoform 1
alt prot [452aa] tripartite motif-containing 55 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         14           3
 C cysteine            5.8         14           1
 D aspartate           4.1         10           1
 E glutamate           7.9         19           3
 F phenylalanine       3.7          9           1
 G glycine             5.8         14           2
 H histidine           2.9          7           1
 I isoleucine          6.2         15           2
 K lysine              5.0         12           2
 L leucine             8.3         20           2
 M methionine          2.1          5           1
 N asparagine          4.6         11           1
 P proline             5.8         14           2
 Q glutamine           6.2         15           2
 R arginine            5.0         12           1
 S serine              8.7         21           1
 T threonine           4.1         10           2
 V valine              5.4         13           2
 W tryptophan          0.4          1           1
 Y tyrosine            2.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif-containing 55 isoform 4 
TRIM55                0.829   tripartite motif-containing 55 isoform 3 
TRIM55                0.829   tripartite motif-containing 55 isoform 1 
TRIM55                0.829   tripartite motif-containing 55 isoform 2 
TRIM54                0.636   ring finger protein 30 isoform 2 
TRIM54                0.594   ring finger protein 30 isoform 1 
TRIM63                0.577   muscle specific ring finger protein 1 
TRIM36                0.179   tripartite motif-containing 36 isoform 1 
MID1                  0.154   midline 1 
MID1                  0.154   midline 1 
MID1                  0.154   midline 1 
TRIM46                0.154   tripartite motif-containing 46 
MID2                  0.145   midline 2 isoform 2 
MID2                  0.145   midline 2 isoform 1 
TRIM59                0.128   tripartite motif-containing 59 
TRIM13                0.118   ret finger protein 2 isoform 2 
TRIM13                0.118   ret finger protein 2 isoform 1 
TRIM13                0.118   ret finger protein 2 isoform 1 
TRIM13                0.118   ret finger protein 2 isoform 1 
TRIM2                 0.109   tripartite motif-containing 2 isoform 2 
TRIM2                 0.109   tripartite motif-containing 2 isoform 1 
TRIM3                 0.103   tripartite motif-containing 3 
TRIM3                 0.103   tripartite motif-containing 3 
TRIM31                0.093   tripartite motif protein 31 
TRIM17                0.086   tripartite motif-containing 17 isoform 3 
TRIM17                0.086   tripartite motif-containing 17 isoform 1 
TRIM17                0.086   tripartite motif-containing 17 isoform 1 
TRIM34                0.086   tripartite motif protein 34 isoform 3 
TRIM34                0.086   tripartite motif protein 34 isoform 1 
TRIM34                0.086   tripartite motif protein 34 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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