LSMD1 27390

Name: LSMD1	Sequence: fasta or formatted (173aa)		NCBI GI: 40254988
Description: LSM domain containing 1		Not currently referenced in the text
Composition: Amino acid Percentage Count Longest homopolymer A alanine 13.9 24 2 C cysteine 3.5 6 1 D aspartate 4.0 7 1 E glutamate 6.4 11 1 F phenylalanine 2.3 4 1 G glycine 9.8 17 1 H histidine 1.7 3 2 I isoleucine 2.3 4 1 K lysine 1.2 2 1 L leucine 12.1 21 2 M methionine 2.3 4 1 N asparagine 1.2 2 1 P proline 5.2 9 2 Q glutamine 3.5 6 2 R arginine 11.0 19 1 S serine 6.4 11 1 T threonine 3.5 6 1 V valine 6.4 11 1 W tryptophan 2.9 5 1 Y tyrosine 0.6 1 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LSM domain containing 1 SNRPB 0.067 small nuclear ribonucleoprotein polypeptide B/B' iso... SNRPB 0.067 small nuclear ribonucleoprotein polypeptide B/B' isof... SNRPN 0.058 small nuclear ribonucleoprotein polypeptide N SNRPN 0.058 small nuclear ribonucleoprotein polypeptide N SNRPN 0.058 small nuclear ribonucleoprotein polypeptide N SNRPN 0.058 small nuclear ribonucleoprotein polypeptide N SNRPN 0.058 small nuclear ribonucleoprotein polypeptide N LSM8 0.037 U6 snRNA-associated Sm-like protein LSm8 RP1L1 0.024 retinitis pigmentosa 1-like 1 LOC100291828 0.015 PREDICTED: hypothetical protein XP_002344932 LOC100288926 0.015 PREDICTED: hypothetical protein XP_002343509 LOC100133224 0.015 PREDICTED: similar to hCG2041320 LOC100133224 0.015 PREDICTED: similar to hCG2041320 LOC100133224 0.015 PREDICTED: similar to hCG2041320 IL9R 0.012 interleukin 9 receptor precursor LOC100289287 0.012 PREDICTED: hypothetical protein XP_002342979 LSM1 0.012 Lsm1 protein LOC100292582 0.009 PREDICTED: similar to tight junction protein 2 (zon... LOC100290406 0.009 PREDICTED: hypothetical protein XP_002347097 CDCA7L 0.009 cell division cycle associated 7-like isoform 3 [Ho... CDCA7L 0.009 cell division cycle associated 7-like isoform 2 [Ho... CDCA7L 0.009 cell division cycle associated 7-like isoform 1 [Hom... LOC100288583 0.009 PREDICTED: hypothetical protein XP_002343504 GJA4 0.009 connexin 37 ITM2A 0.009 integral membrane protein 2A LOC100128997 0.006 PREDICTED: hypothetical protein LOC100128997 0.006 PREDICTED: hypothetical protein LOC100128997 0.006 PREDICTED: hypothetical protein RNF14 0.006 ring finger protein 14 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.