LSM1 35713

Name: LSM1	Sequence: fasta or formatted (133aa)		NCBI GI: 7657313
Description: Lsm1 protein		Referenced in: RNases and RNA Stability Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.8 5 1 C cysteine 0.0 0 0 D aspartate 7.5 10 1 E glutamate 10.5 14 2 F phenylalanine 2.3 3 1 G glycine 6.8 9 1 H histidine 2.3 3 1 I isoleucine 8.3 11 1 K lysine 6.8 9 2 L leucine 13.5 18 2 M methionine 1.5 2 1 N asparagine 2.3 3 1 P proline 3.0 4 1 Q glutamine 6.0 8 2 R arginine 6.8 9 1 S serine 3.8 5 1 T threonine 4.5 6 1 V valine 8.3 11 2 W tryptophan 0.0 0 0 Y tyrosine 2.3 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Lsm1 protein LSM8 0.141 U6 snRNA-associated Sm-like protein LSm8 SNRPG 0.064 small nuclear ribonucleoprotein polypeptide G LOC100132425 0.060 PREDICTED: similar to small nuclear ribonucleoprote... LOC100130932 0.056 small nuclear ribonucleoprotein G-like protein [Hom... LOC100130932 0.056 PREDICTED: small nuclear ribonucleoprotein G-like p... LOC100130932 0.056 PREDICTED: small nuclear ribonucleoprotein G-like p... SNRPN 0.051 small nuclear ribonucleoprotein polypeptide N SNRPN 0.051 small nuclear ribonucleoprotein polypeptide N SNRPN 0.051 small nuclear ribonucleoprotein polypeptide N SNRPN 0.051 small nuclear ribonucleoprotein polypeptide N SNRPN 0.051 small nuclear ribonucleoprotein polypeptide N SNRPB 0.038 small nuclear ribonucleoprotein polypeptide B/B' iso... SNRPB 0.038 small nuclear ribonucleoprotein polypeptide B/B' isof... SCAND3 0.034 SCAN domain containing 3 LSM7 0.026 U6 snRNA-associated Sm-like protein LSm7 C10orf79 0.026 hypothetical protein LOC80217 NAP1L1 0.021 nucleosome assembly protein 1-like 1 NAP1L1 0.021 nucleosome assembly protein 1-like 1 KIAA1529 0.021 hypothetical protein LOC57653 ZSCAN12 0.021 zinc finger and SCAN domain containing 12 NOC3L 0.021 nucleolar complex associated 3 homolog ITSN1 0.017 intersectin 1 isoform ITSN-s ITSN1 0.017 intersectin 1 isoform ITSN-l LSMD1 0.017 LSM domain containing 1 CCDC147 0.017 coiled-coil domain containing 147 VCPIP1 0.013 valosin containing protein (p97)/p47 complex interac... RB1CC1 0.013 Rb1-inducible coiled coil protein 1 isoform 2 [Homo... RB1CC1 0.013 Rb1-inducible coiled coil protein 1 isoform 1 [Homo... EPS15 0.013 epidermal growth factor receptor pathway substrate ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.