Search of human proteins with 7705622

Search of human proteins with 7705622

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7705622 coiled-coil domain containing 53 [Homo sapiens]
         (194 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7705622 coiled-coil domain containing 53 [Homo sapiens]            377   e-105
gi|82830424 gon-4-like isoform a [Homo sapiens]                        30   1.3  
gi|6681764 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9...    30   1.7  
gi|54292123 lysosomal trafficking regulator [Homo sapiens]             30   1.7  
gi|57242793 interphotoreceptor matrix proteoglycan 2 [Homo sapiens]    30   1.7  
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ...    29   2.2  
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ...    29   2.2  
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ...    29   2.2  
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ...    29   2.2  
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ...    29   2.2  
gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens]            29   2.2  
gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens]            29   2.2  
gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens]            29   2.2  
gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens]            29   2.2  
gi|151301098 zinc finger, DBF-type containing 2 [Homo sapiens]         29   2.2  
gi|169208014 PREDICTED: Golgin subfamily A member 8-like protein...    29   2.9  
gi|118498362 kinectin 1 isoform b [Homo sapiens]                       28   3.7  
gi|118498356 kinectin 1 isoform a [Homo sapiens]                       28   3.7  
gi|118498368 kinectin 1 isoform c [Homo sapiens]                       28   3.7  
gi|33620775 kinectin 1 isoform a [Homo sapiens]                        28   3.7  
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    28   3.7  
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof...    28   3.7  
gi|55741849 WD repeat domain 22 [Homo sapiens]                         28   4.9  
gi|239745132 PREDICTED: similar to Golgin subfamily A member 8-l...    28   4.9  
gi|138175817 zinc finger protein 236 [Homo sapiens]                    28   4.9  
gi|169208036 PREDICTED: similar to Golgin subfamily A member 8-l...    28   6.4  
gi|145199237 transcription elongation factor B polypeptide 3 bin...    28   6.4  
gi|223941846 zinc finger protein 652 [Homo sapiens]                    27   8.4  
gi|7662384 zinc finger protein 652 [Homo sapiens]                      27   8.4  
gi|19743796 SH3 and multiple ankyrin repeat domains 2 isoform 2 ...    27   8.4  

>gi|7705622 coiled-coil domain containing 53 [Homo sapiens]
          Length = 194

 Score =  377 bits (967), Expect = e-105
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MDEDGLPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHTVQFLNRFSTVCEEKLADLSLRIQ 60
           MDEDGLPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHTVQFLNRFSTVCEEKLADLSLRIQ
Sbjct: 1   MDEDGLPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHTVQFLNRFSTVCEEKLADLSLRIQ 60

Query: 61  QIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQES 120
           QIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQES
Sbjct: 61  QIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQES 120

Query: 121 EVSAENILTVAKDPRYARYLKMVQVGVPVMAIRNKMISEGLDPDLLERPDAPVPDGESEK 180
           EVSAENILTVAKDPRYARYLKMVQVGVPVMAIRNKMISEGLDPDLLERPDAPVPDGESEK
Sbjct: 121 EVSAENILTVAKDPRYARYLKMVQVGVPVMAIRNKMISEGLDPDLLERPDAPVPDGESEK 180

Query: 181 TVEESSDSESSFSD 194
           TVEESSDSESSFSD
Sbjct: 181 TVEESSDSESSFSD 194


>gi|82830424 gon-4-like isoform a [Homo sapiens]
          Length = 2240

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 15/133 (11%)

Query: 70   DAKLSSIPGLDDVTVEVSPLNVTSV----TNGAH--PEATSEQPQQNSTQDSGLQESEVS 123
            + +LSS PG  + +  V   +V +     T G    PE   E+   + TQD   + S  S
Sbjct: 1421 EVRLSSPPGKPEDSSSVDGQSVGTPVGPETGGEKNGPEEEEEEDFDDLTQDEEDEMSSAS 1480

Query: 124  AENILTVAKDPRYARYLKMVQVGVPVMAIRNKMISEGLDPDLLERPDAPVPDGESEKTVE 183
             E++L+V +       L+     +  +A   +M  EG   +   + +   P+ E E+  E
Sbjct: 1481 EESVLSVPE-------LQETMEKLTWLASERRMSQEGESEEENSQEENSEPEEEEEEEAE 1533

Query: 184  --ESSDSESSFSD 194
              ES   E   +D
Sbjct: 1534 GMESLQKEDEMTD 1546


>gi|6681764 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9,
           39kDa [Homo sapiens]
          Length = 377

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 10/29 (34%), Positives = 21/29 (72%)

Query: 66  LNILDAKLSSIPGLDDVTVEVSPLNVTSV 94
           ++I D KL  +PGL+D+ ++ +PL + ++
Sbjct: 322 MHITDMKLPHLPGLEDLGIQATPLELKAI 350


>gi|54292123 lysosomal trafficking regulator [Homo sapiens]
          Length = 3801

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 72  KLSSIPGLDDVTVEVSPLNVTSV-TNGAHPEATSEQPQQNSTQDSGLQES 120
           K +S+P +D + +E   L+   V T+  H +A S+ PQ  S   +GL+E+
Sbjct: 832 KDASVPDIDGIDIEQKELSSVHVGTSFHHQQAYSDSPQSLSKFYAGLKEA 881


>gi|57242793 interphotoreceptor matrix proteoglycan 2 [Homo sapiens]
          Length = 1241

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 69  LDAKLSSIPGLDDVTVEVSPLNVTSVTNGA------HPEATSEQPQQNSTQDSGLQ--ES 120
           L   +S +PG+DD +V  +PL +TSV   A        +A   +  +  T+ S  +  +S
Sbjct: 702 LPKHISEVPGVDDYSVTKAPLILTSVAISASTDKSDQADAILREDMEQITESSNYEWFDS 761

Query: 121 EVS 123
           EVS
Sbjct: 762 EVS 764


>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
           isoform 1 [Homo sapiens]
          Length = 1599

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 22/135 (16%)

Query: 81  DVTVEVSPLNVTSVTNGAHPEATS----------EQPQQNSTQDSGLQESEVSAENILTV 130
           +VT  ++P  + S T    P ATS          E+ ++    ++G  ESE   E +L  
Sbjct: 427 EVTASMAPPTIPSATPATAPSATSPAQEEEMEEEEEEEEGEAGEAGEAESEKGGEELLPP 486

Query: 131 AKDPRYARYLK------MVQVGVPVMAIR------NKMISEGLDPDLLERPDAPVPDGES 178
              P  A   +        QV V V   R      NK  + G   D  +  +  VP+ E+
Sbjct: 487 ESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVEN 546

Query: 179 EKTVEESSDSESSFS 193
           +     +   ES  S
Sbjct: 547 QPPAGSNPGPESEGS 561


>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
           isoform 2 [Homo sapiens]
          Length = 1512

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 22/135 (16%)

Query: 81  DVTVEVSPLNVTSVTNGAHPEATS----------EQPQQNSTQDSGLQESEVSAENILTV 130
           +VT  ++P  + S T    P ATS          E+ ++    ++G  ESE   E +L  
Sbjct: 340 EVTASMAPPTIPSATPATAPSATSPAQEEEMEEEEEEEEGEAGEAGEAESEKGGEELLPP 399

Query: 131 AKDPRYARYLK------MVQVGVPVMAIR------NKMISEGLDPDLLERPDAPVPDGES 178
              P  A   +        QV V V   R      NK  + G   D  +  +  VP+ E+
Sbjct: 400 ESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVEN 459

Query: 179 EKTVEESSDSESSFS 193
           +     +   ES  S
Sbjct: 460 QPPAGSNPGPESEGS 474


>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
           isoform 3 [Homo sapiens]
          Length = 1435

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 22/135 (16%)

Query: 81  DVTVEVSPLNVTSVTNGAHPEATS----------EQPQQNSTQDSGLQESEVSAENILTV 130
           +VT  ++P  + S T    P ATS          E+ ++    ++G  ESE   E +L  
Sbjct: 263 EVTASMAPPTIPSATPATAPSATSPAQEEEMEEEEEEEEGEAGEAGEAESEKGGEELLPP 322

Query: 131 AKDPRYARYLK------MVQVGVPVMAIR------NKMISEGLDPDLLERPDAPVPDGES 178
              P  A   +        QV V V   R      NK  + G   D  +  +  VP+ E+
Sbjct: 323 ESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVEN 382

Query: 179 EKTVEESSDSESSFS 193
           +     +   ES  S
Sbjct: 383 QPPAGSNPGPESEGS 397


>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
           isoform 1 [Homo sapiens]
          Length = 1599

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 22/135 (16%)

Query: 81  DVTVEVSPLNVTSVTNGAHPEATS----------EQPQQNSTQDSGLQESEVSAENILTV 130
           +VT  ++P  + S T    P ATS          E+ ++    ++G  ESE   E +L  
Sbjct: 427 EVTASMAPPTIPSATPATAPSATSPAQEEEMEEEEEEEEGEAGEAGEAESEKGGEELLPP 486

Query: 131 AKDPRYARYLK------MVQVGVPVMAIR------NKMISEGLDPDLLERPDAPVPDGES 178
              P  A   +        QV V V   R      NK  + G   D  +  +  VP+ E+
Sbjct: 487 ESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVEN 546

Query: 179 EKTVEESSDSESSFS 193
           +     +   ES  S
Sbjct: 547 QPPAGSNPGPESEGS 561


>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
           isoform 4 [Homo sapiens]
          Length = 1403

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 22/135 (16%)

Query: 81  DVTVEVSPLNVTSVTNGAHPEATS----------EQPQQNSTQDSGLQESEVSAENILTV 130
           +VT  ++P  + S T    P ATS          E+ ++    ++G  ESE   E +L  
Sbjct: 231 EVTASMAPPTIPSATPATAPSATSPAQEEEMEEEEEEEEGEAGEAGEAESEKGGEELLPP 290

Query: 131 AKDPRYARYLK------MVQVGVPVMAIR------NKMISEGLDPDLLERPDAPVPDGES 178
              P  A   +        QV V V   R      NK  + G   D  +  +  VP+ E+
Sbjct: 291 ESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVEN 350

Query: 179 EKTVEESSDSESSFS 193
           +     +   ES  S
Sbjct: 351 QPPAGSNPGPESEGS 365


>gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens]
          Length = 761

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 49  EEKLADLSLRIQQIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQ 108
           +E +AD+S RIQ +E     L ++++       +T ++  +N   +   A  +A +E  Q
Sbjct: 163 DELMADISKRIQSLEDESKSLKSQVAEA----KMTFKIFQMNEERL-KIAIKDALNENSQ 217

Query: 109 QNSTQDSGLQESEVSAENILTVAK 132
              +Q   LQE+EV  E +  + K
Sbjct: 218 LQESQKQLLQEAEVWKEQVSELNK 241


>gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens]
          Length = 804

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 49  EEKLADLSLRIQQIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQ 108
           +E +AD+S RIQ +E     L ++++       +T ++  +N   +   A  +A +E  Q
Sbjct: 163 DELMADISKRIQSLEDESKSLKSQVAEA----KMTFKIFQMNEERL-KIAIKDALNENSQ 217

Query: 109 QNSTQDSGLQESEVSAENILTVAK 132
              +Q   LQE+EV  E +  + K
Sbjct: 218 LQESQKQLLQEAEVWKEQVSELNK 241


>gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens]
          Length = 775

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 49  EEKLADLSLRIQQIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQ 108
           +E +AD+S RIQ +E     L ++++       +T ++  +N   +   A  +A +E  Q
Sbjct: 134 DELMADISKRIQSLEDESKSLKSQVAEA----KMTFKIFQMNEERL-KIAIKDALNENSQ 188

Query: 109 QNSTQDSGLQESEVSAENILTVAK 132
              +Q   LQE+EV  E +  + K
Sbjct: 189 LQESQKQLLQEAEVWKEQVSELNK 212


>gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens]
          Length = 792

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 49  EEKLADLSLRIQQIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQ 108
           +E +AD+S RIQ +E     L ++++       +T ++  +N   +   A  +A +E  Q
Sbjct: 151 DELMADISKRIQSLEDESKSLKSQVAEA----KMTFKIFQMNEERL-KIAIKDALNENSQ 205

Query: 109 QNSTQDSGLQESEVSAENILTVAK 132
              +Q   LQE+EV  E +  + K
Sbjct: 206 LQESQKQLLQEAEVWKEQVSELNK 229


>gi|151301098 zinc finger, DBF-type containing 2 [Homo sapiens]
          Length = 2354

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 24/105 (22%)

Query: 40  FLNRFSTVCEEKLADLSLRIQQIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTN--- 96
           ++++ S+ C++ L  ++ + Q I   +++ +A+  S+       V+ S  + +S TN   
Sbjct: 446 YVSKISSDCDDILHLVTNQSQMIVKEISLQNARHISL-------VDQSYESSSSETNFDC 498

Query: 97  GAHPEATSEQPQQNSTQ--------------DSGLQESEVSAENI 127
            A P++TS+ PQQ+ T+              + G   SEVSA+++
Sbjct: 499 DASPQSTSDYPQQSVTEVNLPKEVHIGLVDKNYGSSSSEVSADSV 543


>gi|169208014 PREDICTED: Golgin subfamily A member 8-like protein 3
           isoform 2 [Homo sapiens]
          Length = 602

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 16/138 (11%)

Query: 63  ETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQESEV 122
           E  L  L  +L  + G  ++  +V      S+ N    E   EQ ++   Q+  +QE   
Sbjct: 304 EVELQHLRKELERVAG--ELQAQVKNNQRISLLNQRQEERIREQEERLRKQEERIQEQHK 361

Query: 123 SAENIL---TVAKDPRYARYLKMVQVGVPVMAIRNKM-------ISEGLDPDLLERPDAP 172
           S + +    +V K+P        +Q+   V  ++ K+        S   +P+    P AP
Sbjct: 362 SLQQLAKPQSVFKEPNNENK-NALQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAP 420

Query: 173 VPDGESEK---TVEESSD 187
            P GES      +EE +D
Sbjct: 421 GPGGESSSFMDHLEEKAD 438


>gi|118498362 kinectin 1 isoform b [Homo sapiens]
          Length = 1306

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 70  DAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQESEVS 123
           D KLS    ++D  V   PLNV   ++        E+ Q+   ++  ++ES+ S
Sbjct: 83  DFKLSDALAVEDDQVAPVPLNVVETSSSVRERKKKEKKQKPVLEEQVIKESDAS 136


>gi|118498356 kinectin 1 isoform a [Homo sapiens]
          Length = 1357

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 70  DAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQESEVS 123
           D KLS    ++D  V   PLNV   ++        E+ Q+   ++  ++ES+ S
Sbjct: 83  DFKLSDALAVEDDQVAPVPLNVVETSSSVRERKKKEKKQKPVLEEQVIKESDAS 136


>gi|118498368 kinectin 1 isoform c [Homo sapiens]
          Length = 1300

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 70  DAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQESEVS 123
           D KLS    ++D  V   PLNV   ++        E+ Q+   ++  ++ES+ S
Sbjct: 83  DFKLSDALAVEDDQVAPVPLNVVETSSSVRERKKKEKKQKPVLEEQVIKESDAS 136


>gi|33620775 kinectin 1 isoform a [Homo sapiens]
          Length = 1357

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 70  DAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQESEVS 123
           D KLS    ++D  V   PLNV   ++        E+ Q+   ++  ++ES+ S
Sbjct: 83  DFKLSDALAVEDDQVAPVPLNVVETSSSVRERKKKEKKQKPVLEEQVIKESDAS 136


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
            [Homo sapiens]
          Length = 8749

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 12/33 (36%), Positives = 23/33 (69%)

Query: 49   EEKLADLSLRIQQIETTLNILDAKLSSIPGLDD 81
            E   + + ++I QI+ T+  +++KLSSI GL++
Sbjct: 1480 ETSSSAMDMQISQIKVTIQEIESKLSSIVGLEE 1512


>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
            [Homo sapiens]
          Length = 8797

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 12/33 (36%), Positives = 23/33 (69%)

Query: 49   EEKLADLSLRIQQIETTLNILDAKLSSIPGLDD 81
            E   + + ++I QI+ T+  +++KLSSI GL++
Sbjct: 1473 ETSSSAMDMQISQIKVTIQEIESKLSSIVGLEE 1505


>gi|55741849 WD repeat domain 22 [Homo sapiens]
          Length = 942

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 149 VMAIRNKMISEG------LDPDLLERPDAPVPDGESEKTVEESSDSE 189
           ++A+ N+  SE       LD DL  RP +P P+ ES  +   SS  +
Sbjct: 524 LLALSNESDSEENVCEVELDTDLFPRPRSPSPEDESSSSSSSSSSED 570


>gi|239745132 PREDICTED: similar to Golgin subfamily A member 8-like
           protein 1 [Homo sapiens]
          Length = 602

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 16/138 (11%)

Query: 63  ETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQESEV 122
           E  L  L  +L  + G  ++  +V      S+ N    E   EQ ++   Q+  +QE   
Sbjct: 304 EVELQHLRKELERVAG--ELQAQVKKNQRISLLNQRQEERIQEQEERLRKQEERIQEQHK 361

Query: 123 SAENIL---TVAKDPRYARYLKMVQVGVPVMAIRNKM-------ISEGLDPDLLERPDAP 172
           S + +    +V ++P        +Q+   V  ++ K+        S   +P+    P AP
Sbjct: 362 SLQQLAKPQSVFEEPNNENK-NALQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAP 420

Query: 173 VPDGESEK---TVEESSD 187
            P GES      +EE +D
Sbjct: 421 GPGGESSSFMDHLEEKAD 438


>gi|138175817 zinc finger protein 236 [Homo sapiens]
          Length = 1845

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 74   SSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQESEVSAENILTV 130
            SS     ++T+ +S LN TS   G+ P  T   P   STQ+  +  S V  +  +T+
Sbjct: 1516 SSSGSPQEITLTISELNTTS---GSLPSTTPMSPSAISTQNLVMSSSGVGGDASVTL 1569


>gi|169208036 PREDICTED: similar to Golgin subfamily A member 8-like
           protein 1 isoform 2 [Homo sapiens]
          Length = 601

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 13/131 (9%)

Query: 63  ETTLNILDAKLSSIPGLDDVTVEVSPLNVTSVTNGAHPEATSEQPQQNSTQDSGLQESEV 122
           E  L  L  +L  + G  ++  +V      S+ N    E   EQ ++   Q+  +QE   
Sbjct: 304 EVELQHLRKELERVAG--ELQAQVKKNQRISLLNQRQEERIQEQEERLRKQEERIQEQHK 361

Query: 123 SAENIL---TVAKDPRYARYLKMVQVGVPVMAIRNKM-------ISEGLDPDLLERPDAP 172
           S + +    +V ++P        +Q+   V  ++ K+        S   +P+    P AP
Sbjct: 362 SLQQLAKPQSVFEEPNNENK-NALQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAP 420

Query: 173 VPDGESEKTVE 183
            P GES   ++
Sbjct: 421 GPGGESSSFMD 431


>gi|145199237 transcription elongation factor B polypeptide 3 binding
            protein 1 [Homo sapiens]
          Length = 1221

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 12   GIDLTKVPAIQQKRTVAFLNQFVV---HTVQFLNRFSTVCEEKLADLSLRIQQIETTL 66
            G++LT+V  +     V + + FV      V +  RFS V E  LAD S+ ++ ++  L
Sbjct: 1073 GLELTRVTVVDTDVHVVY-DTFVKPDNEIVDYNTRFSGVTEADLADTSVTLRDVQAVL 1129


>gi|223941846 zinc finger protein 652 [Homo sapiens]
          Length = 606

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 35  VHTVQFLNRFSTVCEEKLADLSLRIQQIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSV 94
           VH V+     S   EE+  ++S + +QI   +N+ +  L+   G   V+ +     V   
Sbjct: 90  VHAVKEDRENSDDTEEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQSKETPVLK- 148

Query: 95  TNGAHPEATSEQPQQNSTQDSGLQESEVSAENIL 128
           T+    E  SE+   + + D G  E +   E I+
Sbjct: 149 TSSEEEEEESEEEATDDSNDYGENEKQKKKEKIV 182


>gi|7662384 zinc finger protein 652 [Homo sapiens]
          Length = 606

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 35  VHTVQFLNRFSTVCEEKLADLSLRIQQIETTLNILDAKLSSIPGLDDVTVEVSPLNVTSV 94
           VH V+     S   EE+  ++S + +QI   +N+ +  L+   G   V+ +     V   
Sbjct: 90  VHAVKEDRENSDDTEEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQSKETPVLK- 148

Query: 95  TNGAHPEATSEQPQQNSTQDSGLQESEVSAENIL 128
           T+    E  SE+   + + D G  E +   E I+
Sbjct: 149 TSSEEEEEESEEEATDDSNDYGENEKQKKKEKIV 182


>gi|19743796 SH3 and multiple ankyrin repeat domains 2 isoform 2
           [Homo sapiens]
          Length = 281

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 121 EVSAENILTVAKDPRYARYLKMVQVGVPVMAIRNKMISEGLDPDLLERPDAPVPDGESEK 180
           EV+ EN++ V     + + + M++ G   + ++   ++  LDPD   R  AP P   +  
Sbjct: 99  EVNNENVVKVG----HRQVVNMIRQGGNHLVLKVVTVTRNLDPDDTARKKAPPPPKRAPT 154

Query: 181 T 181
           T
Sbjct: 155 T 155


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.128    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,723,096
Number of Sequences: 37866
Number of extensions: 267726
Number of successful extensions: 1132
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1117
Number of HSP's gapped (non-prelim): 42
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.