Guide to the Human Genome
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Name: KTN1 Sequence: fasta or formatted (1357aa) NCBI GI: 33620775
Description:

kinectin 1 isoform a

Referenced in:

Kinesins

Other entries for this name:
alt mRNA [1357aa] kinectin 1 isoform a
alt prot [1306aa] kinectin 1 isoform b
alt prot [1300aa] kinectin 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         85           4
 C cysteine            0.4          5           1
 D aspartate           4.6         62           2
 E glutamate          14.3        194           3
 F phenylalanine       1.8         24           2
 G glycine             1.9         26           1
 H histidine           1.8         25           1
 I isoleucine          3.5         48           1
 K lysine             13.2        179           3
 L leucine            11.2        152           2
 M methionine          2.2         30           2
 N asparagine          4.1         56           2
 P proline             1.8         25           2
 Q glutamine           9.4        128           3
 R arginine            3.0         41           2
 S serine              7.1         96           3
 T threonine           4.9         66           2
 V valine              6.9         94           2
 W tryptophan          0.5          7           1
 Y tyrosine            1.0         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   kinectin 1 isoform a 
KTN1                  1.000   kinectin 1 isoform a 
KTN1                  0.952   kinectin 1 isoform b 
KTN1                  0.946   kinectin 1 isoform c 
RRBP1                 0.094   ribosome binding protein 1 
RRBP1                 0.094   ribosome binding protein 1 
MYH9                  0.061   myosin, heavy polypeptide 9, non-muscle 
CENPE                 0.061   centromere protein E 
GCC2                  0.059   GRIP and coiled-coil domain-containing 2 
MYH2                  0.059   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.059   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH1                  0.058   myosin, heavy chain 1, skeletal muscle, adult [Homo...
EEA1                  0.058   early endosome antigen 1, 162kD 
MYH7                  0.057   myosin, heavy chain 7, cardiac muscle, beta 
MYH8                  0.057   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH10                 0.056   myosin, heavy polypeptide 10, non-muscle 
GOLGA4                0.056   golgi autoantigen, golgin subfamily a, 4 
NUMA1                 0.055   nuclear mitotic apparatus protein 1 
GOLGB1                0.055   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH6                  0.054   myosin heavy chain 6 
CCDC88A               0.053   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.053   coiled-coil domain containing 88A isoform 1 
GOLGA3                0.052   Golgi autoantigen, golgin subfamily a, 3 
MYH4                  0.051   myosin, heavy polypeptide 4, skeletal muscle 
PLEC1                 0.050   plectin 1 isoform 11 
PLEC1                 0.050   plectin 1 isoform 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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