Guide to the Human Genome
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Name: PKNOX2 Sequence: fasta or formatted (472aa) NCBI GI: 116812644
Description:

PBX/knotted 1 homeobox 2

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         40           3
 C cysteine            1.1          5           1
 D aspartate           6.1         29           2
 E glutamate           6.8         32           7
 F phenylalanine       2.1         10           2
 G glycine             3.8         18           2
 H histidine           3.0         14           1
 I isoleucine          4.2         20           1
 K lysine              4.0         19           2
 L leucine             9.5         45           2
 M methionine          3.8         18           2
 N asparagine          6.4         30           2
 P proline             7.8         37           4
 Q glutamine           9.1         43           3
 R arginine            2.8         13           3
 S serine              8.1         38           2
 T threonine           5.7         27           2
 V valine              5.3         25           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PBX/knotted 1 homeobox 2 
PKNOX1                0.508   PBX/knotted 1 homeobox 1 
MEIS2                 0.221   Meis homeobox 2 isoform g 
MEIS2                 0.221   Meis homeobox 2 isoform a 
MEIS2                 0.221   Meis homeobox 2 isoform d 
MEIS2                 0.221   Meis homeobox 2 isoform c 
MEIS2                 0.221   Meis homeobox 2 isoform b 
MEIS2                 0.221   Meis homeobox 2 isoform f 
MEIS1                 0.218   Meis homeobox 1 
MEIS2                 0.194   Meis homeobox 2 isoform h 
MEIS3                 0.190   Meis1, myeloid ecotropic viral integration site 1 ho...
MEIS3                 0.170   Meis1, myeloid ecotropic viral integration site 1 ho...
TGIF2LX               0.064   TGFB-induced factor homeobox 2-like, X-linked 
TGIF2LY               0.062   TGFB-induced factor homeobox 2-like, Y-linked 
TGIF2                 0.060   TGFB-induced factor homeobox 2 
TGIF1                 0.060   TG-interacting factor isoform a 
TGIF1                 0.060   TG-interacting factor isoform c 
TGIF1                 0.060   TG-interacting factor isoform d 
TGIF1                 0.060   TG-interacting factor isoform d 
TGIF1                 0.060   TG-interacting factor isoform d 
TGIF1                 0.060   TG-interacting factor isoform d 
TGIF1                 0.060   TG-interacting factor isoform c 
TGIF1                 0.060   TG-interacting factor isoform b 
IRX6                  0.047   iroquois homeobox protein 6 
PBX3                  0.045   pre-B-cell leukemia homeobox 3 isoform 2 
PBX3                  0.045   pre-B-cell leukemia homeobox 3 isoform 1 
PBX2                  0.039   pre-B-cell leukemia homeobox 2 
IRX2                  0.038   iroquois homeobox 2 
IRX2                  0.038   iroquois homeobox 2 
PBX4                  0.038   pre-B-cell leukemia homeobox 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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