Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MEIS2 Sequence: fasta or formatted (401aa) NCBI GI: 24762244
Description:

Meis homeobox 2 isoform a

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt prot [381aa] Meis homeobox 2 isoform f
alt prot [477aa] Meis homeobox 2 isoform c
alt prot [394aa] Meis homeobox 2 isoform b
alt prot [470aa] Meis homeobox 2 isoform d
alt prot [388aa] Meis homeobox 2 isoform g
alt prot [306aa] Meis homeobox 2 isoform h
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         30           2
 C cysteine            1.5          6           1
 D aspartate           8.2         33           4
 E glutamate           4.2         17           2
 F phenylalanine       3.0         12           1
 G glycine             9.2         37           2
 H histidine           5.5         22           2
 I isoleucine          3.7         15           1
 K lysine              4.2         17           2
 L leucine             7.5         30           2
 M methionine          4.2         17           1
 N asparagine          4.2         17           2
 P proline             8.2         33           2
 Q glutamine           5.0         20           2
 R arginine            4.2         17           3
 S serine              8.5         34           2
 T threonine           3.0         12           1
 V valine              4.7         19           1
 W tryptophan          1.0          4           1
 Y tyrosine            2.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Meis homeobox 2 isoform a 
MEIS2                 0.973   Meis homeobox 2 isoform b 
MEIS2                 0.965   Meis homeobox 2 isoform g 
MEIS2                 0.950   Meis homeobox 2 isoform c 
MEIS2                 0.938   Meis homeobox 2 isoform f 
MEIS2                 0.924   Meis homeobox 2 isoform d 
MEIS1                 0.824   Meis homeobox 1 
MEIS2                 0.737   Meis homeobox 2 isoform h 
MEIS3                 0.573   Meis1, myeloid ecotropic viral integration site 1 ho...
MEIS3                 0.541   Meis1, myeloid ecotropic viral integration site 1 ho...
PKNOX2                0.250   PBX/knotted 1 homeobox 2 
PKNOX1                0.231   PBX/knotted 1 homeobox 1 
TGIF2LX               0.065   TGFB-induced factor homeobox 2-like, X-linked 
TGIF2LY               0.064   TGFB-induced factor homeobox 2-like, Y-linked 
TGIF1                 0.060   TG-interacting factor isoform b 
TGIF1                 0.060   TG-interacting factor isoform c 
TGIF1                 0.060   TG-interacting factor isoform c 
TGIF1                 0.060   TG-interacting factor isoform a 
TGIF1                 0.058   TG-interacting factor isoform d 
TGIF1                 0.058   TG-interacting factor isoform d 
TGIF1                 0.058   TG-interacting factor isoform d 
TGIF1                 0.058   TG-interacting factor isoform d 
TGIF2                 0.058   TGFB-induced factor homeobox 2 
PBX2                  0.048   pre-B-cell leukemia homeobox 2 
PBX4                  0.048   pre-B-cell leukemia homeobox 4 
PBX1                  0.047   pre-B-cell leukemia homeobox 1 
PBX3                  0.044   pre-B-cell leukemia homeobox 3 isoform 2 
PBX3                  0.044   pre-B-cell leukemia homeobox 3 isoform 1 
IRX3                  0.035   iroquois homeobox 3 
IRX1                  0.034   iroquois homeobox protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press