Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TGIF2LY Sequence: fasta or formatted (185aa) NCBI GI: 21245108
Description:

TGFB-induced factor homeobox 2-like, Y-linked

Referenced in:

Gene Families
Homeobox and Related Proteins
Y-linked Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         18           3
 C cysteine            2.2          4           1
 D aspartate           4.3          8           1
 E glutamate           6.5         12           3
 F phenylalanine       1.1          2           1
 G glycine             3.8          7           1
 H histidine           2.7          5           1
 I isoleucine          4.3          8           2
 K lysine              8.1         15           3
 L leucine             6.5         12           2
 M methionine          3.2          6           1
 N asparagine          4.3          8           2
 P proline             8.1         15           1
 Q glutamine           5.9         11           2
 R arginine            9.2         17           3
 S serine              9.2         17           2
 T threonine           4.9          9           1
 V valine              3.2          6           2
 W tryptophan          1.1          2           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TGFB-induced factor homeobox 2-like, Y-linked 
TGIF2LX               0.778   TGFB-induced factor homeobox 2-like, X-linked 
TGIF1                 0.253   TG-interacting factor isoform a 
TGIF2                 0.253   TGFB-induced factor homeobox 2 
TGIF1                 0.250   TG-interacting factor isoform c 
TGIF1                 0.250   TG-interacting factor isoform d 
TGIF1                 0.250   TG-interacting factor isoform d 
TGIF1                 0.250   TG-interacting factor isoform d 
TGIF1                 0.250   TG-interacting factor isoform d 
TGIF1                 0.250   TG-interacting factor isoform c 
TGIF1                 0.250   TG-interacting factor isoform b 
PKNOX2                0.162   PBX/knotted 1 homeobox 2 
MEIS3                 0.156   Meis1, myeloid ecotropic viral integration site 1 ho...
MEIS2                 0.148   Meis homeobox 2 isoform h 
MEIS2                 0.148   Meis homeobox 2 isoform g 
MEIS2                 0.148   Meis homeobox 2 isoform a 
MEIS2                 0.148   Meis homeobox 2 isoform d 
MEIS2                 0.148   Meis homeobox 2 isoform c 
MEIS2                 0.148   Meis homeobox 2 isoform b 
MEIS2                 0.148   Meis homeobox 2 isoform f 
PKNOX1                0.142   PBX/knotted 1 homeobox 1 
MEIS1                 0.142   Meis homeobox 1 
MEIS3                 0.099   Meis1, myeloid ecotropic viral integration site 1 ho...
MKX                   0.088   mohawk homeobox 
PBX4                  0.085   pre-B-cell leukemia homeobox 4 
PBX1                  0.082   pre-B-cell leukemia homeobox 1 
IRX4                  0.080   iroquois homeobox 4 
IRX1                  0.080   iroquois homeobox protein 1 
IRX3                  0.080   iroquois homeobox 3 
IRX6                  0.080   iroquois homeobox protein 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press