Guide to the Human Genome
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Name: PBX4 Sequence: fasta or formatted (374aa) NCBI GI: 15149472
Description:

pre-B-cell leukemia homeobox 4

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         35           2
 C cysteine            2.1          8           1
 D aspartate           3.7         14           1
 E glutamate           6.4         24           2
 F phenylalanine       2.4          9           1
 G glycine             7.2         27           3
 H histidine           2.1          8           1
 I isoleucine          4.0         15           1
 K lysine              5.1         19           2
 L leucine             8.0         30           2
 M methionine          2.4          9           1
 N asparagine          4.0         15           2
 P proline             7.8         29           3
 Q glutamine           6.1         23           2
 R arginine            7.2         27           2
 S serine              9.1         34           2
 T threonine           6.1         23           2
 V valine              4.0         15           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pre-B-cell leukemia homeobox 4 
PBX1                  0.638   pre-B-cell leukemia homeobox 1 
PBX3                  0.636   pre-B-cell leukemia homeobox 3 isoform 1 
PBX2                  0.613   pre-B-cell leukemia homeobox 2 
PBX3                  0.558   pre-B-cell leukemia homeobox 3 isoform 2 
MEIS2                 0.053   Meis homeobox 2 isoform h 
MEIS2                 0.053   Meis homeobox 2 isoform g 
MEIS2                 0.053   Meis homeobox 2 isoform a 
MEIS2                 0.053   Meis homeobox 2 isoform d 
MEIS2                 0.053   Meis homeobox 2 isoform c 
MEIS2                 0.053   Meis homeobox 2 isoform b 
MEIS2                 0.053   Meis homeobox 2 isoform f 
MEIS3                 0.053   Meis1, myeloid ecotropic viral integration site 1 ho...
MEIS1                 0.053   Meis homeobox 1 
PKNOX1                0.049   PBX/knotted 1 homeobox 1 
SIX2                  0.048   SIX homeobox 2 
PKNOX2                0.048   PBX/knotted 1 homeobox 2 
TGIF2LX               0.047   TGFB-induced factor homeobox 2-like, X-linked 
TGIF2LY               0.041   TGFB-induced factor homeobox 2-like, Y-linked 
TGIF1                 0.041   TG-interacting factor isoform a 
TGIF1                 0.041   TG-interacting factor isoform c 
TGIF1                 0.041   TG-interacting factor isoform d 
TGIF1                 0.041   TG-interacting factor isoform d 
TGIF1                 0.041   TG-interacting factor isoform d 
TGIF1                 0.041   TG-interacting factor isoform d 
TGIF1                 0.041   TG-interacting factor isoform c 
TGIF1                 0.041   TG-interacting factor isoform b 
TGIF2                 0.041   TGFB-induced factor homeobox 2 
IRX4                  0.037   iroquois homeobox 4 
SIX1                  0.037   SIX homeobox 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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