Guide to the Human Genome
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Name: TGIF1 Sequence: fasta or formatted (252aa) NCBI GI: 28178857
Description:

TG-interacting factor isoform d

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt prot [401aa] TG-interacting factor isoform a
alt prot [286aa] TG-interacting factor isoform b
alt prot [272aa] TG-interacting factor isoform c
alt mRNA [252aa] TG-interacting factor isoform d
alt mRNA [252aa] TG-interacting factor isoform d
alt mRNA [252aa] TG-interacting factor isoform d
alt prot [272aa] TG-interacting factor isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         16           2
 C cysteine            2.0          5           1
 D aspartate           5.2         13           1
 E glutamate           4.4         11           2
 F phenylalanine       3.6          9           1
 G glycine             5.6         14           1
 H histidine           1.6          4           1
 I isoleucine          3.6          9           1
 K lysine              5.2         13           1
 L leucine            10.3         26           2
 M methionine          2.4          6           1
 N asparagine          4.8         12           1
 P proline             8.7         22           3
 Q glutamine           5.6         14           2
 R arginine            6.0         15           4
 S serine             10.3         26           3
 T threonine           7.5         19           2
 V valine              4.8         12           1
 W tryptophan          0.8          2           1
 Y tyrosine            1.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TG-interacting factor isoform d 
TGIF1                 1.000   TG-interacting factor isoform a 
TGIF1                 1.000   TG-interacting factor isoform c 
TGIF1                 1.000   TG-interacting factor isoform d 
TGIF1                 1.000   TG-interacting factor isoform d 
TGIF1                 1.000   TG-interacting factor isoform d 
TGIF1                 1.000   TG-interacting factor isoform c 
TGIF1                 1.000   TG-interacting factor isoform b 
TGIF2                 0.352   TGFB-induced factor homeobox 2 
TGIF2LX               0.212   TGFB-induced factor homeobox 2-like, X-linked 
TGIF2LY               0.181   TGFB-induced factor homeobox 2-like, Y-linked 
PKNOX2                0.113   PBX/knotted 1 homeobox 2 
PKNOX1                0.103   PBX/knotted 1 homeobox 1 
MEIS1                 0.101   Meis homeobox 1 
MEIS3                 0.101   Meis1, myeloid ecotropic viral integration site 1 ho...
MEIS2                 0.099   Meis homeobox 2 isoform h 
MEIS2                 0.099   Meis homeobox 2 isoform d 
MEIS2                 0.099   Meis homeobox 2 isoform b 
MEIS2                 0.099   Meis homeobox 2 isoform f 
MEIS2                 0.097   Meis homeobox 2 isoform g 
MEIS2                 0.097   Meis homeobox 2 isoform a 
MEIS2                 0.097   Meis homeobox 2 isoform c 
IRX4                  0.074   iroquois homeobox 4 
MKX                   0.072   mohawk homeobox 
IRX6                  0.070   iroquois homeobox protein 6 
IRX3                  0.066   iroquois homeobox 3 
IRX1                  0.066   iroquois homeobox protein 1 
PBX4                  0.062   pre-B-cell leukemia homeobox 4 
IRX5                  0.062   iroquois homeobox protein 5 
IRX2                  0.062   iroquois homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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