Guide to the Human Genome
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Name: TGIF2 Sequence: fasta or formatted (237aa) NCBI GI: 11141881
Description:

TGFB-induced factor homeobox 2

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         14           2
 C cysteine            0.8          2           1
 D aspartate           4.6         11           1
 E glutamate           6.3         15           1
 F phenylalanine       2.5          6           1
 G glycine             6.8         16           2
 H histidine           1.3          3           1
 I isoleucine          2.1          5           1
 K lysine              5.1         12           1
 L leucine            14.3         34           2
 M methionine          1.7          4           1
 N asparagine          3.8          9           1
 P proline            11.0         26           3
 Q glutamine           5.1         12           2
 R arginine            6.3         15           3
 S serine             10.5         25           2
 T threonine           4.6         11           1
 V valine              5.1         12           1
 W tryptophan          0.8          2           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TGFB-induced factor homeobox 2 
TGIF1                 0.379   TG-interacting factor isoform a 
TGIF1                 0.379   TG-interacting factor isoform c 
TGIF1                 0.379   TG-interacting factor isoform d 
TGIF1                 0.379   TG-interacting factor isoform d 
TGIF1                 0.379   TG-interacting factor isoform d 
TGIF1                 0.379   TG-interacting factor isoform d 
TGIF1                 0.379   TG-interacting factor isoform c 
TGIF1                 0.379   TG-interacting factor isoform b 
TGIF2LX               0.295   TGFB-induced factor homeobox 2-like, X-linked 
TGIF2LY               0.197   TGFB-induced factor homeobox 2-like, Y-linked 
PKNOX2                0.122   PBX/knotted 1 homeobox 2 
MEIS3                 0.120   Meis1, myeloid ecotropic viral integration site 1 ho...
PKNOX1                0.115   PBX/knotted 1 homeobox 1 
MEIS1                 0.106   Meis homeobox 1 
MEIS2                 0.106   Meis homeobox 2 isoform h 
MEIS2                 0.106   Meis homeobox 2 isoform d 
MEIS2                 0.106   Meis homeobox 2 isoform c 
MEIS2                 0.106   Meis homeobox 2 isoform b 
MEIS2                 0.106   Meis homeobox 2 isoform f 
MEIS2                 0.104   Meis homeobox 2 isoform g 
MEIS2                 0.104   Meis homeobox 2 isoform a 
MKX                   0.071   mohawk homeobox 
MEIS3                 0.071   Meis1, myeloid ecotropic viral integration site 1 ho...
IRX6                  0.071   iroquois homeobox protein 6 
IRX4                  0.069   iroquois homeobox 4 
IRX1                  0.067   iroquois homeobox protein 1 
IRX3                  0.067   iroquois homeobox 3 
PBX4                  0.067   pre-B-cell leukemia homeobox 4 
IRX2                  0.062   iroquois homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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