Guide to the Human Genome
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Name: MEIS1 Sequence: fasta or formatted (390aa) NCBI GI: 4505151
Description:

Meis homeobox 1

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         24           2
 C cysteine            1.5          6           1
 D aspartate           8.5         33           4
 E glutamate           4.1         16           2
 F phenylalanine       2.8         11           1
 G glycine             9.2         36           2
 H histidine           5.4         21           2
 I isoleucine          4.6         18           1
 K lysine              4.4         17           2
 L leucine             6.7         26           2
 M methionine          4.9         19           1
 N asparagine          4.6         18           2
 P proline             7.4         29           2
 Q glutamine           5.1         20           2
 R arginine            4.9         19           3
 S serine              8.2         32           2
 T threonine           4.4         17           1
 V valine              3.8         15           1
 W tryptophan          1.0          4           1
 Y tyrosine            2.3          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Meis homeobox 1 
MEIS2                 0.854   Meis homeobox 2 isoform b 
MEIS2                 0.845   Meis homeobox 2 isoform a 
MEIS2                 0.819   Meis homeobox 2 isoform f 
MEIS2                 0.812   Meis homeobox 2 isoform g 
MEIS2                 0.807   Meis homeobox 2 isoform d 
MEIS2                 0.798   Meis homeobox 2 isoform c 
MEIS2                 0.671   Meis homeobox 2 isoform h 
MEIS3                 0.565   Meis1, myeloid ecotropic viral integration site 1 ho...
MEIS3                 0.533   Meis1, myeloid ecotropic viral integration site 1 ho...
PKNOX2                0.253   PBX/knotted 1 homeobox 2 
PKNOX1                0.236   PBX/knotted 1 homeobox 1 
TGIF2LX               0.065   TGFB-induced factor homeobox 2-like, X-linked 
TGIF2LY               0.063   TGFB-induced factor homeobox 2-like, Y-linked 
TGIF1                 0.062   TG-interacting factor isoform b 
TGIF1                 0.062   TG-interacting factor isoform a 
TGIF1                 0.062   TG-interacting factor isoform c 
TGIF1                 0.062   TG-interacting factor isoform d 
TGIF1                 0.062   TG-interacting factor isoform d 
TGIF1                 0.062   TG-interacting factor isoform d 
TGIF1                 0.062   TG-interacting factor isoform d 
TGIF1                 0.062   TG-interacting factor isoform c 
TGIF2                 0.060   TGFB-induced factor homeobox 2 
PBX4                  0.049   pre-B-cell leukemia homeobox 4 
PBX2                  0.048   pre-B-cell leukemia homeobox 2 
PBX1                  0.048   pre-B-cell leukemia homeobox 1 
PBX3                  0.045   pre-B-cell leukemia homeobox 3 isoform 2 
PBX3                  0.045   pre-B-cell leukemia homeobox 3 isoform 1 
MKX                   0.039   mohawk homeobox 
IRX2                  0.036   iroquois homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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