Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TGIF1 Sequence: fasta or formatted (272aa) NCBI GI: 4507473
Description:

TG-interacting factor isoform c

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt prot [401aa] TG-interacting factor isoform a
alt prot [286aa] TG-interacting factor isoform b
alt mRNA [272aa] TG-interacting factor isoform c
alt prot [252aa] TG-interacting factor isoform d
alt prot [252aa] TG-interacting factor isoform d
alt prot [252aa] TG-interacting factor isoform d
alt prot [252aa] TG-interacting factor isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         18           2
 C cysteine            1.8          5           1
 D aspartate           5.5         15           1
 E glutamate           5.1         14           2
 F phenylalanine       3.3          9           1
 G glycine             6.2         17           1
 H histidine           1.5          4           1
 I isoleucine          3.7         10           1
 K lysine              5.9         16           2
 L leucine             9.6         26           2
 M methionine          2.6          7           1
 N asparagine          4.4         12           1
 P proline             8.1         22           3
 Q glutamine           5.1         14           2
 R arginine            5.5         15           4
 S serine             10.7         29           3
 T threonine           7.4         20           2
 V valine              4.8         13           1
 W tryptophan          0.7          2           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TG-interacting factor isoform c 
TGIF1                 1.000   TG-interacting factor isoform c 
TGIF1                 0.985   TG-interacting factor isoform a 
TGIF1                 0.983   TG-interacting factor isoform b 
TGIF1                 0.929   TG-interacting factor isoform d 
TGIF1                 0.929   TG-interacting factor isoform d 
TGIF1                 0.929   TG-interacting factor isoform d 
TGIF1                 0.929   TG-interacting factor isoform d 
TGIF2                 0.327   TGFB-induced factor homeobox 2 
TGIF2LX               0.197   TGFB-induced factor homeobox 2-like, X-linked 
TGIF2LY               0.168   TGFB-induced factor homeobox 2-like, Y-linked 
MEIS3                 0.105   Meis1, myeloid ecotropic viral integration site 1 ho...
PKNOX2                0.105   PBX/knotted 1 homeobox 2 
PKNOX1                0.099   PBX/knotted 1 homeobox 1 
MEIS2                 0.096   Meis homeobox 2 isoform h 
MEIS2                 0.096   Meis homeobox 2 isoform d 
MEIS2                 0.096   Meis homeobox 2 isoform b 
MEIS2                 0.096   Meis homeobox 2 isoform f 
MEIS2                 0.094   Meis homeobox 2 isoform g 
MEIS2                 0.094   Meis homeobox 2 isoform a 
MEIS2                 0.094   Meis homeobox 2 isoform c 
MEIS1                 0.094   Meis homeobox 1 
IRX4                  0.069   iroquois homeobox 4 
MKX                   0.067   mohawk homeobox 
MEIS3                 0.065   Meis1, myeloid ecotropic viral integration site 1 ho...
IRX6                  0.065   iroquois homeobox protein 6 
IRX3                  0.061   iroquois homeobox 3 
IRX1                  0.061   iroquois homeobox protein 1 
PBX4                  0.057   pre-B-cell leukemia homeobox 4 
IRX5                  0.057   iroquois homeobox protein 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press