Guide to the Human Genome
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Name: C1orf125 Sequence: fasta or formatted (1012aa) NCBI GI: 51093836
Description:

hypothetical protein LOC126859 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {938aa} hypothetical protein LOC126859 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         41           2
 C cysteine            1.2         12           2
 D aspartate           5.2         53           2
 E glutamate          12.5        127           4
 F phenylalanine       2.5         25           2
 G glycine             3.1         31           1
 H histidine           3.0         30           2
 I isoleucine          6.2         63           2
 K lysine             10.0        101           2
 L leucine            12.2        123           3
 M methionine          2.6         26           1
 N asparagine          5.0         51           2
 P proline             3.3         33           2
 Q glutamine           4.2         42           2
 R arginine            4.3         44           2
 S serine              6.3         64           2
 T threonine           5.1         52           2
 V valine              5.1         52           1
 W tryptophan          1.2         12           1
 Y tyrosine            3.0         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC126859 isoform 1 
C1orf125              0.807   hypothetical protein LOC126859 isoform 2 
LOC283767             0.021   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.020   PREDICTED: hypothetical protein LOC645202 
LOC440243             0.019   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC400352             0.019   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.019   PREDICTED: similar to Putative golgin subfamily A m...
TCHH                  0.019   trichohyalin 
LOC283685             0.018   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.018   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC727832             0.018   golgi autoantigen, golgin subfamily a-like 
AKD1                  0.017   adenylate kinase domain containing 1 isoform 1 [Hom...
GOLGB1                0.017   golgi autoantigen, golgin subfamily b, macrogolgin ...
CLIP1                 0.017   restin isoform a 
WDR87                 0.016   NYD-SP11 protein 
EIF5B                 0.016   eukaryotic translation initiation factor 5B 
KTN1                  0.016   kinectin 1 isoform a 
KTN1                  0.016   kinectin 1 isoform a 
CENPE                 0.016   centromere protein E 
GOLGA4                0.016   golgi autoantigen, golgin subfamily a, 4 
CDC42BPA              0.016   CDC42-binding protein kinase alpha isoform A 
CCDC39                0.016   coiled-coil domain containing 39 
KTN1                  0.016   kinectin 1 isoform c 
ATRX                  0.016   transcriptional regulator ATRX isoform 2 
ATRX                  0.016   transcriptional regulator ATRX isoform 1 
KIAA1529              0.015   hypothetical protein LOC57653 
LOC651807             0.015   PREDICTED: hypothetical protein 
AKAP9                 0.015   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.015   A-kinase anchor protein 9 isoform 3 
MYH15                 0.015   myosin, heavy polypeptide 15 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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